Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QNK06_RS05625 Genome accession   NZ_CP126097
Coordinates   1076013..1076591 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain KF24     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1071013..1081591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK06_RS05605 (QNK06_05605) hemAT 1071524..1072822 (-) 1299 WP_032725754.1 heme-based aerotactic transducer HemAT -
  QNK06_RS05610 (QNK06_05610) yhfW 1072961..1074490 (-) 1530 WP_283934211.1 FAD-dependent oxidoreductase -
  QNK06_RS05615 (QNK06_05615) yhxC 1074602..1075459 (+) 858 WP_283934212.1 SDR family oxidoreductase -
  QNK06_RS05620 (QNK06_05620) yhzC 1075487..1075720 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  QNK06_RS05625 (QNK06_05625) comK 1076013..1076591 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  QNK06_RS05630 (QNK06_05630) yhxD 1076638..1077537 (-) 900 WP_041851019.1 SDR family oxidoreductase -
  QNK06_RS05635 (QNK06_05635) yhjA 1077754..1078023 (+) 270 WP_003224373.1 excalibur calcium-binding domain-containing protein -
  QNK06_RS05640 (QNK06_05640) yhjB 1078067..1079536 (-) 1470 WP_120027952.1 sodium:solute symporter -
  QNK06_RS05645 (QNK06_05645) yhjC 1079533..1079733 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  QNK06_RS05650 (QNK06_05650) - 1079932..1080303 (-) 372 WP_014476361.1 hypothetical protein -
  QNK06_RS05655 (QNK06_05655) yhjE 1080455..1081078 (+) 624 WP_010886465.1 VTT domain-containing protein -
  QNK06_RS05660 (QNK06_05660) lepB 1081080..1081586 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=835693 QNK06_RS05625 WP_029317573.1 1076013..1076591(+) (comK) [Bacillus subtilis strain KF24]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=835693 QNK06_RS05625 WP_029317573.1 1076013..1076591(+) (comK) [Bacillus subtilis strain KF24]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGATGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995