Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QNH34_RS11320 Genome accession   NZ_CP126096
Coordinates   2221700..2223433 (-) Length   577 a.a.
NCBI ID   WP_041506971.1    Uniprot ID   -
Organism   Bacillus altitudinis strain G6S2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2216700..2228433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH34_RS11305 (QNH34_11305) - 2217587..2218687 (-) 1101 WP_007501159.1 Rap family tetratricopeptide repeat protein -
  QNH34_RS11310 (QNH34_11310) spo0A 2219137..2219940 (-) 804 WP_008342226.1 sporulation transcription factor Spo0A Regulator
  QNH34_RS11315 (QNH34_11315) spoIVB 2220224..2221501 (-) 1278 WP_041506972.1 SpoIVB peptidase -
  QNH34_RS11320 (QNH34_11320) recN 2221700..2223433 (-) 1734 WP_041506971.1 DNA repair protein RecN Machinery gene
  QNH34_RS11325 (QNH34_11325) argR 2223468..2223917 (-) 450 WP_007501163.1 transcriptional regulator ArgR -
  QNH34_RS11330 (QNH34_11330) - 2224285..2225139 (-) 855 WP_041506970.1 TlyA family RNA methyltransferase -
  QNH34_RS11335 (QNH34_11335) dxs 2225136..2227037 (-) 1902 WP_007501165.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QNH34_RS11340 (QNH34_11340) - 2227189..2228079 (-) 891 WP_035702802.1 polyprenyl synthetase family protein -
  QNH34_RS11345 (QNH34_11345) - 2228069..2228329 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64571.46 Da        Isoelectric Point: 4.7424

>NTDB_id=835647 QNH34_RS11320 WP_041506971.1 2221700..2223433(-) (recN) [Bacillus altitudinis strain G6S2]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINQSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGADEIAPALS
QYQEAYDQYMKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNFEKIFSSLQNAYNALRNE
QGGLDWVGMASSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAISRDALLEALNVSELRKKWAKKLAKHIQAELKDLYMEKSSFDTAFTI
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDTG
VSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRAKAGRTMTNVKPLSDDEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=835647 QNH34_RS11320 WP_041506971.1 2221700..2223433(-) (recN) [Bacillus altitudinis strain G6S2]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAGGAGTTAACGGTTTCGTTTGAAAAAGGACTCACAGTTCT
AACAGGGGAAACAGGTGCCGGAAAATCAATCATGATTGACGCTGTCTCACTTCTCGTAGGGGGAAGAGGATCATCTGAAT
TTGTCCGTTATGGCGAAAAAAAAGCAGAGCTGGAAGGTCTTTTTCTTGTACCAGCAGATCATCCTGTATTTGCCCTTTGC
GAGGAGCAAGGAATTGATGCATCTGATGAAATGATGATTCTTCGCCGTGATATCAATCAAAGCGGGAAAAGCATTTGCCG
CATTAATGGTAAGCTTGTCACCATCTCGCTTTTAAGAGAAGTTGGCCGGCTTTTGCTTGATATACATGGACAGCACGATA
ATCAGCTGTTAATGGAGGATGAAAATCATTTGCATTTGCTTGATCAATTTGGAGCAGATGAAATTGCACCTGCTCTCTCG
CAGTATCAAGAAGCGTATGATCAATATATGAAGACGGCGCAAAAACTCAAACAGCTGTCTGAAAATGAACAAGAAATGGT
TCACCGGTTAGACTTATTGCAATTTCAGCTGGAAGAGATTGAAGCGGCACAATTAGAGCCTGGGGAAGATGAGAAGCTTC
AAGAGGAACGTCATCAAATCAGCAATTTTGAAAAAATCTTTTCCTCGCTTCAAAACGCATACAATGCTCTGCGTAATGAG
CAGGGAGGACTTGATTGGGTTGGGATGGCTTCAAGCGAGCTTGAGCAAGTTTCTGAGATCAACGACGATCTGAAAAAGCT
CTCTGAGCAAGTGTCAAACTCCTATTATTTATTGGAAGATTCTACTTTTCAAATGCGCAGCATGCTTGATCAATTAGAAT
TTGATCCAGCCCGTCTTGATTTTATTGAGTCTAGGCTAAATGAGATGAAGCAGCTGAAGCGAAAGTACGGCACAACCGTT
GAGGAAATTTTAGAATATGCGGCTAAGATTGAAGAGGAGATAGACCAAATCCAAAATCGAGACAGCCATTTGCAGACACT
TAAAAACAAACTTGATGCGATAAGCCGGGATGCATTGCTTGAAGCGCTCAACGTGTCAGAGCTCCGTAAAAAATGGGCGA
AAAAACTGGCGAAGCACATTCAAGCTGAATTGAAGGATTTATATATGGAGAAGTCTTCTTTTGATACCGCTTTTACGATT
CGATATGCACCTTTTGGCAGTACGGACTGCCCGCTTTTAGATGGAAAACCCGTACAGCTCGGGAAAAATGGCATAGATCA
AGCGCAATTTGTCATTTCTACAAATCCGGGTGAACCGATGAAATCTTTGTCAAAAGTAGCATCTGGAGGAGAAATTTCAC
GTGTCATGCTGGCAGTGAAAAGTATTTTCTCAGCGAAACAAGAAGTGACGTCCATTATATTTGATGAAGTGGATACGGGT
GTTAGCGGCAGAGTCGCACAAGCCATTGCTGAAAAAATTTATAAAGTAGCAGCAGGCTCACAAGTACTCTGTATTACCCA
TCTGCCGCAAGTTGCAGCAATGGCTGATACACATCTTTTTATTTCTAAACGCGCTAAAGCTGGTAGAACAATGACGAATG
TCAAACCACTCAGTGATGATGAAAAAGTGAGTGAAATTGGCCGAATGATTGCTGGTGTAGAAGTCACTGAGCTCACAAAA
CAGCATGCAAAAGAATTACTGCACCAAGCAAATGATGTCAAAACGACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.737

100

0.757