Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QNH34_RS10350 Genome accession   NZ_CP126096
Coordinates   2044853..2045500 (+) Length   215 a.a.
NCBI ID   WP_283933435.1    Uniprot ID   -
Organism   Bacillus altitudinis strain G6S2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2039853..2050500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH34_RS10310 (QNH34_10310) - 2040017..2041135 (+) 1119 WP_234710323.1 NADH-dependent flavin oxidoreductase -
  QNH34_RS10315 (QNH34_10315) - 2041185..2041691 (-) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  QNH34_RS10320 (QNH34_10320) - 2041860..2042279 (+) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  QNH34_RS10325 (QNH34_10325) - 2042301..2042753 (-) 453 WP_017359729.1 YppG family protein -
  QNH34_RS10330 (QNH34_10330) - 2042862..2043242 (-) 381 WP_234710322.1 YppE family protein -
  QNH34_RS10335 (QNH34_10335) - 2043292..2043525 (-) 234 WP_224558417.1 DUF5446 family protein -
  QNH34_RS10340 (QNH34_10340) sspM 2043722..2043826 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  QNH34_RS10345 (QNH34_10345) - 2043850..2044806 (-) 957 WP_045034305.1 DUF2515 domain-containing protein -
  QNH34_RS10350 (QNH34_10350) recU 2044853..2045500 (+) 648 WP_283933435.1 Holliday junction resolvase RecU Machinery gene
  QNH34_RS10355 (QNH34_10355) - 2045507..2048173 (+) 2667 WP_283933143.1 PBP1A family penicillin-binding protein -
  QNH34_RS10360 (QNH34_10360) - 2048209..2048718 (-) 510 WP_251185260.1 YpoC family protein -
  QNH34_RS10365 (QNH34_10365) nth 2048715..2049377 (-) 663 WP_008344602.1 endonuclease III -
  QNH34_RS10370 (QNH34_10370) - 2049395..2050099 (-) 705 WP_096881570.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24830.12 Da        Isoelectric Point: 9.7294

>NTDB_id=835645 QNH34_RS10350 WP_283933435.1 2044853..2045500(+) (recU) [Bacillus altitudinis strain G6S2]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSATDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDDSKQNYVRKRFNTKG

Nucleotide


Download         Length: 648 bp        

>NTDB_id=835645 QNH34_RS10350 WP_283933435.1 2044853..2045500(+) (recU) [Bacillus altitudinis strain G6S2]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTACTGACCTCTTCTTCTTTTGGGAGCGGCAGCAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGTCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGATAGCAAGCAAAATTACGTTCGAAAAAGGTTTAACACGA
AAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

93.953

0.684