Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QNH34_RS05225 Genome accession   NZ_CP126096
Coordinates   1044292..1044870 (+) Length   192 a.a.
NCBI ID   WP_017366958.1    Uniprot ID   A0A5D4P9G2
Organism   Bacillus altitudinis strain G6S2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1039292..1049870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH34_RS05205 (QNH34_05205) - 1039785..1041080 (-) 1296 WP_007497200.1 globin-coupled sensor protein -
  QNH34_RS05210 (QNH34_05210) - 1041172..1042704 (-) 1533 WP_283933369.1 FAD-dependent oxidoreductase -
  QNH34_RS05215 (QNH34_05215) - 1042847..1043707 (+) 861 WP_061418601.1 SDR family oxidoreductase -
  QNH34_RS05220 (QNH34_05220) - 1043772..1044002 (-) 231 WP_003210924.1 IDEAL domain-containing protein -
  QNH34_RS05225 (QNH34_05225) comK 1044292..1044870 (+) 579 WP_017366958.1 competence protein ComK Regulator
  QNH34_RS05230 (QNH34_05230) - 1045014..1046120 (+) 1107 WP_283933370.1 D-TA family PLP-dependent enzyme -
  QNH34_RS05235 (QNH34_05235) - 1046507..1046989 (+) 483 WP_008348662.1 hypothetical protein -
  QNH34_RS05240 (QNH34_05240) - 1047020..1048459 (-) 1440 WP_283933371.1 PLP-dependent aminotransferase family protein -
  QNH34_RS05245 (QNH34_05245) - 1048602..1049771 (+) 1170 WP_081114756.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22348.40 Da        Isoelectric Point: 8.7996

>NTDB_id=835624 QNH34_RS05225 WP_017366958.1 1044292..1044870(+) (comK) [Bacillus altitudinis strain G6S2]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHIFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=835624 QNH34_RS05225 WP_017366958.1 1044292..1044870(+) (comK) [Bacillus altitudinis strain G6S2]
GTGTCAGGAATTAGTGAAACACCATTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGAGTATATTCAAAAGTGATCGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCGCTGCAAATAATAGAACGCA
GTTGCAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGTATTTCCCACAAGCCTCCC
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGCCCTCAATGCGGATGGATCTCCCA
CAAATACATTCATATCTTTCAGGAATCATCCCTCGGAGACACGGTTGTTACTTTTACAAACGAGCAATCGGTCAAACTAG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTACACCGAACAGCGTATCTCCGAACTAAATTTCAAGATCGACTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAACCTTGTGTATGATTTTATCTTAAGAGA
ACTTCGTAATCGTTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4P9G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615