Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QNH28_RS26960 Genome accession   NZ_CP126095
Coordinates   6066614..6067981 (-) Length   455 a.a.
NCBI ID   WP_060625849.1    Uniprot ID   A0A0W1ASV2
Organism   Paenibacillus sp. G2S3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6061614..6072981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH28_RS26935 (QNH28_26935) ispF 6062175..6062663 (-) 489 WP_042131242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  QNH28_RS26940 (QNH28_26940) ispD 6062660..6063358 (-) 699 WP_283909236.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QNH28_RS26945 (QNH28_26945) - 6063454..6064542 (-) 1089 WP_042131244.1 PIN/TRAM domain-containing protein -
  QNH28_RS26950 (QNH28_26950) pssA 6064721..6065458 (-) 738 WP_042192208.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  QNH28_RS26955 (QNH28_26955) disA 6065523..6066599 (-) 1077 WP_042131246.1 DNA integrity scanning diadenylate cyclase DisA -
  QNH28_RS26960 (QNH28_26960) radA 6066614..6067981 (-) 1368 WP_060625849.1 DNA repair protein RadA Machinery gene
  QNH28_RS26965 (QNH28_26965) clpC 6068272..6070740 (-) 2469 WP_042131248.1 ATP-dependent protease ATP-binding subunit ClpC -
  QNH28_RS26970 (QNH28_26970) - 6070776..6071840 (-) 1065 WP_042131249.1 protein arginine kinase -
  QNH28_RS26975 (QNH28_26975) - 6071869..6072393 (-) 525 WP_076121176.1 UvrB/UvrC motif-containing protein -
  QNH28_RS26980 (QNH28_26980) - 6072424..6072885 (-) 462 WP_042131251.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49698.55 Da        Isoelectric Point: 6.5864

>NTDB_id=835607 QNH28_RS26960 WP_060625849.1 6066614..6067981(-) (radA) [Paenibacillus sp. G2S3]
MAKPKTKFFCTDCGYESPKWFGKCPGCQAWNSMVEETESVVKTQGMNAPIFHSKEKAQSIISIESDKEPRILTGIGELNR
VLGGGIVPGSLVLVGGDPGIGKSTLLLQTSHALTTQGLRVLYISGEESVRQTKLRADRLGALSAELYVLCETNMESIEEA
IEQIQPQFLVIDSIQTVFMPEVTSAPGSVTQVRECTTRFMRIAKIRGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEVGLTEVENPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALVAATHFPS
PRRMCTGMDHQRMALIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAIDLAVAISIASSFRDISTKPYDVFFGEVGLTGE
VRGVSRAEMRVKEAAKLGFRRVIMPEKSLKGWKHPQDIQIIGVSTVADALSVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=835607 QNH28_RS26960 WP_060625849.1 6066614..6067981(-) (radA) [Paenibacillus sp. G2S3]
ATGGCTAAACCAAAAACTAAATTTTTTTGCACCGATTGTGGATACGAATCGCCAAAATGGTTCGGTAAATGTCCCGGGTG
CCAAGCTTGGAACTCCATGGTGGAGGAAACGGAAAGCGTAGTCAAAACACAGGGAATGAATGCCCCTATTTTTCATAGTA
AAGAAAAGGCACAATCGATCATAAGTATAGAAAGTGACAAGGAACCGCGCATACTGACAGGTATAGGTGAGCTTAACCGT
GTTCTCGGTGGGGGGATCGTGCCAGGATCGCTGGTACTAGTAGGGGGAGACCCAGGAATCGGTAAATCTACGCTCTTATT
ACAGACATCGCATGCTCTGACTACTCAGGGATTGCGAGTGCTGTACATTTCGGGCGAAGAATCGGTAAGGCAAACTAAGC
TGCGTGCGGATCGCCTCGGTGCGTTGTCAGCTGAGCTATATGTACTATGTGAGACGAATATGGAAAGCATAGAAGAAGCG
ATTGAACAAATTCAACCGCAATTTCTTGTTATCGATTCAATTCAGACTGTATTTATGCCAGAAGTAACCAGTGCGCCAGG
CAGCGTGACCCAGGTTCGGGAATGTACGACAAGATTTATGCGTATCGCTAAGATTCGGGGAATTGCTACAGTTCTCGTTG
GGCATGTCACCAAGGAAGGAGCTATTGCAGGCCCAAGGATGCTTGAACATATGGTGGATTGTGTGCTGTATTTTGAGGGA
GAGCGGCATCATACGTATAGACTCCTGCGGGCTGTGAAGAATCGCTTCGGTTCAACGAATGAAATCGGCATTTTCGAAAT
GGGTGAAGTGGGACTAACAGAAGTAGAGAATCCATCTGAGCTCTTCTTGTCGGAACGTCCACTTGGTGTAGCTGGATCTA
CAGTCGTGGCCAGTATGGAAGGGACTAGACCAGTGCTTGTAGAGCTTCAGGCTCTTGTCGCCGCCACTCATTTCCCCTCC
CCGCGCCGGATGTGCACAGGTATGGATCACCAGCGAATGGCACTTATTATCGCTGTACTGGAAAAGCGGATGGGCATGTT
CCTGCAGAATCAGGATGCTTACCTTAATGTTGCTGGAGGAGTGAAGCTGGATGAACCGGCGATTGATTTAGCAGTAGCTA
TTAGTATCGCTTCCAGCTTTCGTGATATTTCAACAAAACCTTACGATGTTTTCTTCGGTGAAGTAGGGCTTACAGGTGAA
GTAAGAGGTGTTTCACGCGCGGAAATGCGTGTGAAGGAGGCCGCGAAGCTAGGCTTCCGGCGGGTGATCATGCCAGAGAA
AAGTTTGAAGGGCTGGAAGCACCCGCAAGATATCCAGATTATTGGCGTCAGTACCGTAGCAGATGCACTATCGGTCGCGT
TAGATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(345-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W1ASV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.673
  radA Streptococcus pneumoniae Rx1

58.889

98.901

0.582
  radA Streptococcus pneumoniae D39

58.889

98.901

0.582
  radA Streptococcus pneumoniae R6

58.889

98.901

0.582
  radA Streptococcus pneumoniae TIGR4

58.889

98.901

0.582
  radA Streptococcus mitis NCTC 12261

58.889

98.901

0.582
  radA Streptococcus mitis SK321

58.889

98.901

0.582