Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QNH28_RS22110 Genome accession   NZ_CP126095
Coordinates   5034158..5034589 (+) Length   143 a.a.
NCBI ID   WP_283912235.1    Uniprot ID   A0AA95RUB4
Organism   Paenibacillus sp. G2S3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 5029158..5039589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH28_RS22080 (QNH28_22080) - 5029968..5030132 (+) 165 WP_172628852.1 hypothetical protein -
  QNH28_RS22085 (QNH28_22085) - 5030129..5030464 (-) 336 WP_349655006.1 YolD-like family protein -
  QNH28_RS22090 (QNH28_22090) - 5030767..5031327 (-) 561 WP_283908570.1 hypothetical protein -
  QNH28_RS22095 (QNH28_22095) - 5031445..5031933 (+) 489 WP_283908571.1 PH domain-containing protein -
  QNH28_RS22100 (QNH28_22100) - 5031985..5033460 (-) 1476 WP_283908572.1 glycosyl hydrolase -
  QNH28_RS22105 (QNH28_22105) - 5033634..5034050 (-) 417 WP_283912234.1 cytidine deaminase -
  QNH28_RS22110 (QNH28_22110) nucA/comI 5034158..5034589 (+) 432 WP_283912235.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QNH28_RS22115 (QNH28_22115) - 5034670..5034819 (-) 150 WP_179281775.1 hypothetical protein -
  QNH28_RS22120 (QNH28_22120) - 5034969..5035145 (+) 177 WP_283908573.1 YjfB family protein -
  QNH28_RS22125 (QNH28_22125) - 5035296..5035829 (+) 534 WP_283912236.1 ImmA/IrrE family metallo-endopeptidase -
  QNH28_RS22130 (QNH28_22130) - 5035909..5036070 (+) 162 WP_170880221.1 hypothetical protein -
  QNH28_RS22135 (QNH28_22135) - 5036194..5036364 (-) 171 WP_283908574.1 hypothetical protein -
  QNH28_RS22140 (QNH28_22140) - 5037059..5037553 (+) 495 WP_283908575.1 sigma-70 family RNA polymerase sigma factor -
  QNH28_RS22145 (QNH28_22145) - 5037550..5038530 (+) 981 WP_283908576.1 hypothetical protein -
  QNH28_RS22150 (QNH28_22150) - 5038719..5038850 (+) 132 WP_283908577.1 hypothetical protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 15865.69 Da        Isoelectric Point: 4.3885

>NTDB_id=835600 QNH28_RS22110 WP_283912235.1 5034158..5034589(+) (nucA/comI) [Paenibacillus sp. G2S3]
MQKLLTSLIIVVLLALGGYWYEQNGDPAAPSSTSDSEVVQLIFPSDRYPETAKHIQDAIAKGESATCTINREQAEENRKE
SLKGIPTKKGYDRDEWPMAMCNEGGQGADIEYITPKDNRGAGSWVGNQLEDYADGTRVEFMFK

Nucleotide


Download         Length: 432 bp        

>NTDB_id=835600 QNH28_RS22110 WP_283912235.1 5034158..5034589(+) (nucA/comI) [Paenibacillus sp. G2S3]
ATACAGAAATTACTCACCAGTCTCATCATTGTTGTGTTACTTGCTTTGGGCGGTTACTGGTATGAACAGAACGGAGATCC
GGCAGCCCCCTCGTCCACATCTGATTCAGAAGTTGTTCAGCTGATCTTCCCATCAGATCGTTATCCTGAGACCGCCAAGC
ACATTCAGGACGCGATTGCCAAAGGGGAATCTGCCACATGCACCATTAACCGTGAGCAGGCTGAAGAGAACCGCAAAGAA
TCCTTAAAAGGGATCCCCACCAAAAAAGGCTACGACCGCGACGAATGGCCCATGGCCATGTGTAATGAAGGTGGCCAAGG
GGCCGACATTGAATACATAACCCCAAAAGATAACCGCGGCGCAGGAAGCTGGGTTGGCAATCAATTAGAAGATTATGCGG
ACGGAACCCGCGTAGAATTTATGTTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.932

72.028

0.497