Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   QNH31_RS10175 Genome accession   NZ_CP126094
Coordinates   2044474..2045604 (+) Length   376 a.a.
NCBI ID   WP_021481447.1    Uniprot ID   -
Organism   Bacillus subtilis strain G2S2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2043109..2070464 2044474..2045604 within 0


Gene organization within MGE regions


Location: 2043109..2070464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH31_RS10165 (QNH31_10165) - 2043109..2043483 (+) 375 WP_021481445.1 YoqO family protein -
  QNH31_RS21020 - 2044195..2044341 (+) 147 Protein_1948 phage holin -
  QNH31_RS10175 (QNH31_10175) rapC 2044474..2045604 (+) 1131 WP_021481447.1 tetratricopeptide repeat protein Regulator
  QNH31_RS10180 (QNH31_10180) - 2045594..2045737 (+) 144 WP_153801665.1 hypothetical protein -
  QNH31_RS10185 (QNH31_10185) - 2045891..2046091 (-) 201 WP_021481449.1 hypothetical protein -
  QNH31_RS10190 (QNH31_10190) - 2046313..2046687 (-) 375 Protein_1952 UV damage repair protein UvrX -
  QNH31_RS10195 (QNH31_10195) - 2046685..2046840 (-) 156 Protein_1953 T7SS effector LXG polymorphic toxin -
  QNH31_RS10200 (QNH31_10200) yobM 2046941..2047498 (-) 558 WP_038829958.1 SMI1/KNR4 family protein -
  QNH31_RS10205 (QNH31_10205) yobN 2047626..2049062 (+) 1437 WP_120363441.1 flavin monoamine oxidase family protein -
  QNH31_RS10210 (QNH31_10210) csaA 2049312..2049644 (-) 333 WP_032725963.1 chaperone CsaA -
  QNH31_RS10215 (QNH31_10215) yobQ 2049709..2050434 (-) 726 WP_072175277.1 helix-turn-helix domain-containing protein -
  QNH31_RS10220 (QNH31_10220) yobR 2050449..2051189 (-) 741 WP_041849922.1 GNAT family N-acetyltransferase -
  QNH31_RS10225 (QNH31_10225) yobS 2051267..2051842 (-) 576 WP_015714086.1 TetR/AcrR family transcriptional regulator -
  QNH31_RS10230 (QNH31_10230) yobT 2051848..2052549 (-) 702 WP_153940054.1 MBL fold metallo-hydrolase -
  QNH31_RS10235 (QNH31_10235) yobU 2052625..2053107 (-) 483 WP_014480008.1 GyrI-like domain-containing protein -
  QNH31_RS10240 (QNH31_10240) yobV 2053161..2054099 (-) 939 WP_015714088.1 YafY family protein -
  QNH31_RS10245 (QNH31_10245) csk22 2054304..2054849 (+) 546 WP_015714089.1 mother cell-specific sporulation protein Csk22 -
  QNH31_RS10250 (QNH31_10250) czrA 2054876..2055199 (-) 324 WP_003231284.1 Zn(II)-responsive metalloregulatory transcriptional repressor CzrA -
  QNH31_RS10255 (QNH31_10255) yocA 2055394..2056071 (+) 678 WP_153940055.1 lysozyme family protein -
  QNH31_RS10260 (QNH31_10260) yozB 2056161..2056697 (-) 537 WP_003231280.1 DUF420 domain-containing protein -
  QNH31_RS10265 (QNH31_10265) yocB 2056834..2057616 (-) 783 WP_015251912.1 VLRF1 family aeRF1-type release factor -
  QNH31_RS10270 (QNH31_10270) yocC 2057787..2058284 (+) 498 WP_015714090.1 GNAT family N-acetyltransferase -
  QNH31_RS10275 (QNH31_10275) yocD 2058348..2059325 (+) 978 WP_015714091.1 LD-carboxypeptidase -
  QNH31_RS10280 (QNH31_10280) desE 2059488..2060546 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  QNH31_RS10285 (QNH31_10285) desK 2060666..2061778 (+) 1113 WP_014480016.1 two-component sensor histidine kinase DesK -
  QNH31_RS10290 (QNH31_10290) desR 2061797..2062396 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  QNH31_RS10295 (QNH31_10295) walL 2063004..2063867 (-) 864 WP_014480017.1 3D domain-containing protein -
  QNH31_RS10300 (QNH31_10300) recQ 2064115..2065890 (-) 1776 WP_015714092.1 DNA helicase RecQ -
  QNH31_RS10310 (QNH31_10310) azoJ 2066455..2067081 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  QNH31_RS10315 (QNH31_10315) yocK 2067233..2067724 (-) 492 WP_014477068.1 TraR/DksA family transcriptional regulator -
  QNH31_RS10320 (QNH31_10320) - 2067799..2068131 (-) 333 WP_014480020.1 hypothetical protein -
  QNH31_RS10325 (QNH31_10325) - 2068209..2068436 (+) 228 WP_014480021.1 hypothetical protein -
  QNH31_RS10330 (QNH31_10330) yocM 2068423..2068899 (-) 477 WP_014477071.1 salt stress-responsive protein YocM -
  QNH31_RS10335 (QNH31_10335) - 2068966..2069229 (+) 264 WP_004399338.1 hypothetical protein -
  QNH31_RS10340 (QNH31_10340) - 2069234..2069467 (+) 234 WP_003231251.1 hypothetical protein -
  QNH31_RS10345 (QNH31_10345) yozO 2069561..2069905 (-) 345 WP_003220141.1 PH domain-containing protein -
  QNH31_RS10350 (QNH31_10350) yozC 2070261..2070464 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44393.16 Da        Isoelectric Point: 5.8915

>NTDB_id=835538 QNH31_RS10175 WP_021481447.1 2044474..2045604(+) (rapC) [Bacillus subtilis strain G2S2]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=835538 QNH31_RS10175 WP_021481447.1 2044474..2045604(+) (rapC) [Bacillus subtilis strain G2S2]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455