Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QNH29_RS21970 Genome accession   NZ_CP126093
Coordinates   4455633..4457333 (-) Length   566 a.a.
NCBI ID   WP_283861435.1    Uniprot ID   A0AA95RIW1
Organism   Neobacillus sp. DY30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4450633..4462333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH29_RS21945 (QNH29_21945) - 4451943..4452185 (+) 243 WP_283861430.1 DUF2627 domain-containing protein -
  QNH29_RS21950 (QNH29_21950) - 4452195..4452923 (-) 729 WP_283861431.1 glycerophosphodiester phosphodiesterase -
  QNH29_RS21955 (QNH29_21955) - 4452965..4453102 (+) 138 WP_283861432.1 YycC family protein -
  QNH29_RS21960 (QNH29_21960) spo0A 4453168..4453959 (-) 792 WP_283861433.1 sporulation transcription factor Spo0A -
  QNH29_RS21965 (QNH29_21965) spoIVB 4454239..4455528 (-) 1290 WP_283861434.1 SpoIVB peptidase -
  QNH29_RS21970 (QNH29_21970) recN 4455633..4457333 (-) 1701 WP_283861435.1 DNA repair protein RecN Machinery gene
  QNH29_RS21975 (QNH29_21975) argR 4457349..4457798 (-) 450 WP_283861436.1 transcriptional regulator ArgR -
  QNH29_RS21980 (QNH29_21980) - 4457948..4458787 (-) 840 WP_283861437.1 TlyA family RNA methyltransferase -
  QNH29_RS21985 (QNH29_21985) dxs 4458791..4460683 (-) 1893 WP_283861438.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QNH29_RS21990 (QNH29_21990) - 4460832..4461725 (-) 894 WP_283861439.1 polyprenyl synthetase family protein -
  QNH29_RS21995 (QNH29_21995) - 4461729..4461962 (-) 234 WP_283861440.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 566 a.a.        Molecular weight: 64243.08 Da        Isoelectric Point: 4.9302

>NTDB_id=835479 QNH29_RS21970 WP_283861435.1 4455633..4457333(-) (recN) [Neobacillus sp. DY30]
MLSELSIKNFAIIEALSISFDKGLTVLTGETGAGKSIIIDAIHLLVGGRGSAEFVRHGEEKAEIEGLFQIEDQHPCYSKA
LEFGIEIEEGMIVLRRDISRSGKSVCRINGKLVTISTLREVGSTLVDIHSQHEHQDLMDESRHLLLLDQYGLEEISQSLA
EYQEVFHRYEQTSQKLKSLNENEQKTAHRLDLIQFQFDEIQNAKLKLKEDEELFEEKRKLANFERVFEAVQSSYNALTGE
QKGLDWISMVMGQLEDAAALDTSYKEVYESVMNSFYQLEDASRTLRNELDELEYDPQRLNEIEERLNEINQLKRKYGKTI
EEILEYGAKIEEEIETLQNKETHIGQLEKQLSSIKKDLALEAKQLTELRKSWADKLTNLIHNELKELYMAKTLFEIRFES
ILPHFSKNGVDHVEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQSIAEKIYK
VAVDSQVLCISHLPQVAAMADTHLFISKITEGGRTKTSVNPLSIEEKIKEIGRMISGAEITDLTKKHAEELLFLAAENKK
IEKLPN

Nucleotide


Download         Length: 1701 bp        

>NTDB_id=835479 QNH29_RS21970 WP_283861435.1 4455633..4457333(-) (recN) [Neobacillus sp. DY30]
TTGTTATCAGAATTATCAATAAAAAACTTTGCTATCATTGAGGCCCTTTCCATTTCATTTGACAAGGGGCTGACCGTTTT
AACAGGGGAGACAGGTGCAGGGAAATCCATTATTATTGATGCTATTCACCTGCTTGTAGGTGGCAGAGGTTCGGCTGAGT
TTGTCAGACATGGAGAGGAAAAAGCAGAAATCGAAGGACTTTTTCAAATTGAAGATCAACATCCTTGTTATTCAAAGGCG
TTGGAATTTGGGATAGAAATTGAAGAAGGAATGATTGTCTTACGAAGAGATATTTCACGTTCAGGAAAAAGTGTATGCAG
GATAAATGGCAAGCTCGTGACCATATCAACTCTTCGTGAAGTGGGATCAACCCTAGTAGATATACATAGTCAGCATGAAC
ATCAAGATTTAATGGATGAGAGCAGACATTTACTATTGCTTGATCAATACGGGCTTGAAGAAATTTCTCAGTCACTGGCG
GAATACCAAGAAGTGTTTCACCGTTATGAACAAACGTCCCAAAAGCTAAAATCGTTAAACGAAAATGAGCAAAAAACCGC
ACATCGTCTTGATCTGATTCAATTTCAATTTGATGAAATTCAAAATGCAAAATTAAAGTTAAAAGAAGACGAAGAACTCT
TTGAGGAAAAAAGAAAACTAGCGAATTTTGAGCGAGTATTTGAGGCCGTTCAATCGAGTTATAATGCCTTAACTGGAGAA
CAAAAGGGGCTGGACTGGATTAGTATGGTAATGGGACAGCTTGAAGATGCAGCAGCTTTGGATACCTCTTATAAAGAAGT
ATATGAATCCGTGATGAACAGCTTTTATCAGCTGGAAGATGCTTCCCGTACATTAAGAAATGAATTAGACGAGTTAGAAT
ATGACCCGCAGCGTCTAAATGAGATTGAAGAACGATTAAATGAAATTAATCAATTGAAGCGGAAATATGGAAAAACGATA
GAAGAAATTTTAGAATATGGTGCTAAAATTGAAGAGGAAATCGAAACATTACAAAATAAAGAAACACATATTGGCCAATT
AGAGAAGCAATTATCATCCATTAAAAAGGACCTGGCCCTAGAGGCTAAACAATTAACTGAGCTCCGGAAAAGCTGGGCTG
ATAAGCTGACTAACTTAATACATAACGAATTAAAAGAGCTGTATATGGCAAAAACGCTGTTTGAAATTCGTTTTGAATCG
ATATTGCCTCATTTTTCAAAAAATGGAGTCGATCACGTGGAGTTCTATATCTCCACTAATCCTGGCGAACCGTTAAAGCC
TTTATCTAAAATTGCCTCTGGCGGCGAATTGTCAAGAATTATGCTGGCACTTAAGAGTATTTTTTCAAAACACCAGGGAG
TTACTTCTATTATATTTGATGAGGTGGATACTGGAGTAAGCGGCAGAGTGGCTCAGTCGATTGCTGAAAAAATTTATAAA
GTGGCTGTGGATTCTCAAGTGTTATGTATTTCTCATTTACCACAAGTAGCTGCAATGGCTGATACACATCTATTTATTTC
TAAAATTACTGAAGGCGGACGCACAAAAACATCTGTAAACCCACTTAGTATTGAAGAGAAAATAAAGGAAATCGGCCGTA
TGATTTCCGGTGCTGAAATTACAGATTTAACTAAAAAACATGCCGAAGAATTGTTGTTTTTAGCTGCGGAAAATAAAAAA
ATTGAAAAGCTTCCCAATTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.131

100

0.611