Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   QNH29_RS09825 Genome accession   NZ_CP126093
Coordinates   2012438..2014240 (+) Length   600 a.a.
NCBI ID   WP_283865580.1    Uniprot ID   A0AA95LCH2
Organism   Neobacillus sp. DY30     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2007438..2019240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH29_RS09800 (QNH29_09800) - 2007510..2007989 (+) 480 WP_283864602.1 TRAP transporter small permease -
  QNH29_RS09805 (QNH29_09805) - 2008011..2009312 (+) 1302 WP_283864603.1 TRAP transporter large permease -
  QNH29_RS09810 (QNH29_09810) - 2009463..2009993 (+) 531 WP_283864604.1 helix-turn-helix transcriptional regulator -
  QNH29_RS09815 (QNH29_09815) - 2010130..2010558 (+) 429 WP_283864605.1 MarR family winged helix-turn-helix transcriptional regulator -
  QNH29_RS09820 (QNH29_09820) rcrP 2010652..2012415 (+) 1764 WP_283864606.1 ABC transporter ATP-binding protein Regulator
  QNH29_RS09825 (QNH29_09825) rcrQ 2012438..2014240 (+) 1803 WP_283865580.1 ABC transporter ATP-binding protein Regulator
  QNH29_RS09830 (QNH29_09830) fbp 2014411..2016342 (+) 1932 WP_283864607.1 fructose-1,6-bisphosphatase -
  QNH29_RS09835 (QNH29_09835) - 2016581..2017786 (+) 1206 WP_283864608.1 histidine kinase -
  QNH29_RS09840 (QNH29_09840) - 2017788..2018555 (+) 768 WP_283864609.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 66555.12 Da        Isoelectric Point: 6.2471

>NTDB_id=835471 QNH29_RS09825 WP_283865580.1 2012438..2014240(+) (rcrQ) [Neobacillus sp. DY30]
MTPPGPPHGGGPRGPVAKPKDFKKTFRQLISYCKVFLPLIIIALLLAMAGAIFNIIGPEFLNQITDLITEGMMTSIDLDA
VVNVGAILAFLYGLGALFNYIQGYIMATVTQRVSKNLRKDISTKINRLPLKYFDSTSTGDVLSRITNDVDMIGQTMNQSL
GALVSAVTMFLGSLIMMFYTNWIMAISAILSTFIGFALMTFIISKSQKYFAQQQKELGKLNGHIEEIYSGHHVVKVYNGE
KNAKETFHEINTRLYDSAWKSQFMSGLMMPLMMFVGNFGYVVVSIVGAVLAVNDVISFGVIVAFMIYIRLFTQPLTQIAQ
AATNLQSTAAASERVFEFLAEEEIADESEKQERLETVIGDVEFKNVRFGYSEDKMVINNFSAIAKSGQKVAIVGPTGAGK
TTLVNLLMRFYEVNGGEILIDGVPTHNLTRENIHNLFSMVLQDTWLFEGTIRENIVYSRQGVSDEEIEEACKAVGLHHFI
KTLPKGYDTILDDKANLSSGQKQLITIARAMIEHKPLLILDEATSSVDTRTEVLIQKAMDKLTVGKTSFVIAHRLSTIKN
ADLILVMKNGDIIESGNHEELLQRNGFYAELYNSQFENAS

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=835471 QNH29_RS09825 WP_283865580.1 2012438..2014240(+) (rcrQ) [Neobacillus sp. DY30]
ATGACACCACCAGGCCCGCCGCATGGAGGCGGCCCCCGTGGACCAGTCGCAAAACCAAAGGATTTTAAGAAAACGTTTAG
GCAGCTGATATCTTATTGCAAAGTTTTTTTGCCGCTAATTATCATAGCCTTGTTACTGGCAATGGCAGGGGCCATTTTCA
ACATCATTGGACCAGAGTTCCTGAATCAGATTACCGATTTGATTACGGAAGGAATGATGACCAGCATCGATCTTGACGCA
GTAGTGAATGTCGGAGCAATTCTTGCTTTTTTATATGGCTTAGGTGCTTTGTTTAATTATATTCAAGGTTACATTATGGC
CACCGTTACACAGCGAGTGTCTAAGAATTTACGCAAAGATATTTCAACAAAAATTAATCGTTTGCCGTTAAAATATTTTG
ACTCAACCAGTACCGGAGATGTTTTAAGTCGGATAACAAACGATGTTGATATGATTGGACAGACGATGAACCAAAGCTTA
GGTGCACTCGTTTCGGCAGTGACCATGTTCCTCGGCTCTTTGATCATGATGTTTTATACAAACTGGATTATGGCAATTTC
AGCCATACTATCTACTTTCATTGGCTTTGCTTTGATGACATTCATTATCTCAAAGTCACAAAAGTACTTTGCGCAGCAGC
AAAAAGAGCTTGGTAAACTAAATGGCCATATTGAGGAAATCTATTCTGGCCACCATGTTGTGAAGGTTTATAATGGAGAA
AAAAATGCGAAGGAAACCTTTCATGAAATCAACACAAGACTTTATGATAGCGCATGGAAATCTCAATTTATGTCAGGGCT
GATGATGCCATTGATGATGTTTGTTGGTAATTTTGGTTATGTGGTCGTAAGTATCGTTGGTGCCGTTCTTGCAGTAAATG
ATGTCATTTCATTTGGTGTAATTGTAGCCTTTATGATTTATATCCGACTGTTTACGCAGCCTCTTACACAAATCGCCCAG
GCGGCTACCAACCTGCAGTCCACTGCTGCAGCAAGTGAACGTGTATTCGAATTCCTCGCTGAAGAAGAGATTGCTGACGA
GAGCGAAAAACAGGAAAGACTTGAAACTGTCATTGGGGATGTAGAGTTTAAAAATGTTCGTTTTGGCTATAGCGAAGATA
AAATGGTCATCAATAACTTTTCCGCTATTGCAAAATCAGGTCAAAAAGTGGCAATTGTTGGTCCTACTGGTGCTGGTAAA
ACAACGTTGGTCAACCTGCTGATGCGATTCTATGAAGTAAATGGCGGGGAAATTTTGATTGACGGTGTACCAACACATAA
CCTCACGAGGGAAAACATTCATAACCTGTTTAGTATGGTTCTTCAGGACACGTGGTTGTTTGAAGGTACGATTCGTGAGA
ATATTGTCTATTCCAGACAGGGAGTAAGTGATGAGGAAATTGAAGAGGCCTGTAAAGCAGTGGGGCTTCACCATTTTATT
AAAACACTGCCAAAAGGCTATGATACGATACTCGATGATAAAGCAAATCTTTCCTCTGGCCAAAAACAGCTCATTACCAT
CGCTAGAGCAATGATTGAGCATAAACCATTACTTATTTTAGATGAGGCAACTAGTTCGGTGGATACCCGTACAGAAGTAT
TGATCCAGAAAGCCATGGATAAACTGACAGTCGGCAAAACTTCATTTGTGATTGCCCACAGACTTTCTACCATTAAAAAT
GCTGATTTAATTCTTGTAATGAAAAATGGAGACATTATCGAAAGCGGAAATCACGAGGAATTACTTCAGAGAAATGGTTT
TTATGCTGAGCTTTACAATAGTCAGTTTGAAAATGCGTCATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(378-525)

ABC transporter transmembrane region (ABC_membrane)

(40-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

57.84

95.667

0.553