Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   QNH29_RS09820 Genome accession   NZ_CP126093
Coordinates   2010652..2012415 (+) Length   587 a.a.
NCBI ID   WP_283864606.1    Uniprot ID   -
Organism   Neobacillus sp. DY30     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2005652..2017415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH29_RS09795 (QNH29_09795) - 2006349..2007365 (+) 1017 WP_283864601.1 TRAP transporter substrate-binding protein -
  QNH29_RS09800 (QNH29_09800) - 2007510..2007989 (+) 480 WP_283864602.1 TRAP transporter small permease -
  QNH29_RS09805 (QNH29_09805) - 2008011..2009312 (+) 1302 WP_283864603.1 TRAP transporter large permease -
  QNH29_RS09810 (QNH29_09810) - 2009463..2009993 (+) 531 WP_283864604.1 helix-turn-helix transcriptional regulator -
  QNH29_RS09815 (QNH29_09815) - 2010130..2010558 (+) 429 WP_283864605.1 MarR family winged helix-turn-helix transcriptional regulator -
  QNH29_RS09820 (QNH29_09820) rcrP 2010652..2012415 (+) 1764 WP_283864606.1 ABC transporter ATP-binding protein Regulator
  QNH29_RS09825 (QNH29_09825) rcrQ 2012438..2014240 (+) 1803 WP_283865580.1 ABC transporter ATP-binding protein Regulator
  QNH29_RS09830 (QNH29_09830) fbp 2014411..2016342 (+) 1932 WP_283864607.1 fructose-1,6-bisphosphatase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 65370.09 Da        Isoelectric Point: 8.1642

>NTDB_id=835470 QNH29_RS09820 WP_283864606.1 2010652..2012415(+) (rcrP) [Neobacillus sp. DY30]
MLKIFKYLQKKDWLLIICSLIFIVTQVYLDLKLPDYMREVTVLVQTEGSKMSDVLLNGGYMILCAVGSMVAAMIVGFFAA
KVAAGFSVRLRAMVFEKTMSFSMEEINGFSTPSLITRSTNDITQIQMLIAMGLQVVIKAPILAVWAILKIMGKSWQWTAT
TGIAVAILIVMLTILIFVAMPKFKVIQSLTDNLNRVSRENLSGIRVVHAYNAEKYQEAKFEKANDELTKTNLFTSRTMAI
IMPTMGIIMSGMSLAIYWIGAYLINNASLPNRLSLFSDMVVFSSYAMQVIMAFMMLSFVFIMLPRASVSARRINEVLDTE
ATIMDGTEKEGKKDYSGEVEFRNVSFKYPDASDYILRNVSFTAHKGETVAFIGSTGSGKSTLLNLIPRYFDATEGEVLID
GLNVKNYQQEALRNKLGYVSQKAVLFSGTVSSNVAYGESRKSSAKDHAIKKAVEIAQGTEFVEKMENQYEASIAQGGTNI
SGGQKQRLSIARAVYRQPEIYIFDDSFSALDYKTDRTLRSVLKKETQDATTLIVAQRIGTIKDADRIVVLDDGEVVGIGT
HHELLKNCEVYQEIAYSQLSKEELEIG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=835470 QNH29_RS09820 WP_283864606.1 2010652..2012415(+) (rcrP) [Neobacillus sp. DY30]
GTGCTGAAAATTTTTAAATATCTTCAGAAAAAGGATTGGCTGCTAATCATATGCAGTTTAATTTTCATTGTGACTCAGGT
GTATCTCGATTTAAAGCTGCCTGACTATATGCGCGAAGTCACCGTGCTGGTACAGACGGAAGGAAGTAAGATGAGCGATG
TTCTCCTAAATGGCGGGTATATGATTTTATGTGCTGTTGGCAGCATGGTTGCGGCAATGATTGTCGGATTCTTTGCCGCC
AAAGTCGCCGCTGGTTTTTCTGTTCGGCTCCGTGCGATGGTATTTGAGAAGACCATGTCTTTTTCAATGGAAGAAATCAA
TGGCTTTTCAACTCCTAGTTTGATTACACGCTCCACAAATGATATCACACAGATTCAAATGCTGATTGCAATGGGACTGC
AGGTAGTAATTAAAGCACCTATTTTAGCAGTGTGGGCAATCTTAAAGATTATGGGAAAAAGCTGGCAGTGGACGGCCACT
ACCGGGATCGCCGTTGCTATCCTAATTGTCATGTTAACGATTCTTATTTTTGTTGCGATGCCAAAATTTAAGGTGATTCA
GAGTTTAACAGATAACTTGAATCGTGTTTCAAGGGAAAACTTATCAGGTATCAGGGTGGTTCATGCCTACAATGCCGAAA
AGTATCAGGAAGCGAAATTTGAAAAAGCAAACGATGAACTGACCAAGACGAATCTTTTTACCAGCCGGACCATGGCCATT
ATTATGCCGACAATGGGCATTATTATGTCAGGTATGAGTCTAGCTATCTATTGGATTGGTGCCTACTTAATTAATAATGC
GTCACTACCGAATCGTTTATCTCTATTTTCAGATATGGTCGTTTTCTCTTCTTATGCCATGCAGGTAATAATGGCATTTA
TGATGCTTAGCTTCGTATTTATCATGCTGCCTAGGGCATCTGTTTCTGCAAGACGAATTAATGAAGTGCTCGATACGGAG
GCAACCATCATGGATGGGACAGAGAAAGAAGGAAAGAAGGACTACTCAGGCGAGGTTGAATTCCGGAATGTGAGTTTTAA
ATATCCAGATGCTTCAGATTATATACTTCGAAATGTTAGCTTTACTGCACACAAAGGAGAAACAGTGGCATTTATCGGCT
CCACCGGCAGTGGGAAGAGTACACTGCTTAACCTCATTCCCCGCTATTTTGATGCAACGGAAGGGGAAGTATTGATTGAT
GGTCTGAATGTAAAAAATTATCAGCAAGAGGCATTACGTAATAAACTTGGTTATGTATCCCAAAAAGCTGTATTGTTCAG
CGGTACCGTTTCTTCCAATGTAGCTTATGGTGAAAGTCGTAAGAGTTCAGCAAAGGACCATGCCATTAAAAAGGCGGTGG
AAATAGCACAAGGTACGGAATTTGTTGAGAAAATGGAAAATCAGTATGAGGCTTCCATAGCTCAAGGTGGTACCAATATC
TCTGGCGGACAGAAGCAAAGACTGTCCATTGCCCGTGCGGTATATAGACAGCCAGAAATCTATATTTTTGATGATTCATT
TTCCGCACTAGATTATAAGACAGATAGAACGTTACGGTCTGTTCTAAAAAAAGAAACGCAAGATGCAACTACATTAATTG
TTGCACAACGGATTGGTACCATTAAGGATGCAGATCGAATTGTTGTACTTGATGATGGTGAAGTGGTTGGAATTGGCACC
CACCATGAGCTCTTGAAGAATTGTGAAGTTTACCAAGAAATTGCCTATTCTCAGTTGTCAAAGGAGGAGCTTGAAATTGG
CTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(35-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

54.925

100

0.56