Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QNH29_RS07695 Genome accession   NZ_CP126093
Coordinates   1576071..1577888 (+) Length   605 a.a.
NCBI ID   WP_283864228.1    Uniprot ID   A0AA95RM39
Organism   Neobacillus sp. DY30     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1571071..1582888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH29_RS07670 (QNH29_07670) - 1571102..1571287 (-) 186 WP_283864225.1 hypothetical protein -
  QNH29_RS07675 (QNH29_07675) spxA 1571696..1572091 (+) 396 WP_045519743.1 transcriptional regulator SpxA -
  QNH29_RS07680 (QNH29_07680) mecA 1572390..1573061 (+) 672 WP_283864226.1 adaptor protein MecA -
  QNH29_RS07685 (QNH29_07685) cls 1573132..1574643 (+) 1512 WP_283865555.1 cardiolipin synthase -
  QNH29_RS07690 (QNH29_07690) - 1574742..1575938 (+) 1197 WP_283864227.1 competence protein CoiA family protein -
  QNH29_RS07695 (QNH29_07695) pepF 1576071..1577888 (+) 1818 WP_283864228.1 oligoendopeptidase F Regulator
  QNH29_RS07700 (QNH29_07700) - 1578374..1579240 (-) 867 WP_283864229.1 ClpXP adapter SpxH family protein -
  QNH29_RS07705 (QNH29_07705) - 1579237..1579644 (-) 408 WP_283864230.1 globin -
  QNH29_RS07710 (QNH29_07710) - 1579716..1580288 (-) 573 WP_283864231.1 CYTH domain-containing protein -
  QNH29_RS07715 (QNH29_07715) - 1580407..1580766 (+) 360 WP_283864232.1 hypothetical protein -
  QNH29_RS07720 (QNH29_07720) - 1580798..1581436 (+) 639 WP_283864233.1 GTP pyrophosphokinase family protein -
  QNH29_RS07725 (QNH29_07725) - 1581477..1582277 (+) 801 WP_283864234.1 NAD kinase -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69562.92 Da        Isoelectric Point: 4.8217

>NTDB_id=835463 QNH29_RS07695 WP_283864228.1 1576071..1577888(+) (pepF) [Neobacillus sp. DY30]
MANEAAVKALPSRSEVPVEDTWRLEDIFADDKEWENEFQEVKSQISGIKEFEGKLGESADTLYNALQFQDKLLERIGKLY
TYAHMRYDQDTTNSFYQGLDDRMKNLYSQAGSQLAFIVPEILSLDENKVNGFINEKPELKLYEHAIEEINLQRPHVLSAE
MEAMLAEAGEVMDASSNTFGMLNNADLKFPSVKDESGQEVEITHGRYIRFLESADQRVRHDAFKAVYDTYGKFRNTFAST
ISGNVKKDNFNARIRKYDSARHAALSANNIPESVYDNLVNTVNDHLHLLHRYVKLRKKVLGVDELHMYDLYTPLVKDVKM
EIPYKQAEELVIKGLAPLGEEYSQILKEGFENRWVDVHENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKNQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDEQKRIYLLNHYLEGFRGTVFRQTMFAEYEHLIHQKAQ
NNEALTADSLTAEYYALNKKYFGEEDIVIDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSKQILDEGEPAVKRYIDF
LSAGSSDYPIEVLKKAGVDMTSADPIRDACKVFEEKLNELEQLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=835463 QNH29_RS07695 WP_283864228.1 1576071..1577888(+) (pepF) [Neobacillus sp. DY30]
ATGGCAAACGAAGCTGCGGTAAAGGCGTTGCCTTCTAGAAGTGAAGTACCTGTTGAAGATACATGGAGATTGGAAGATAT
CTTTGCTGACGATAAAGAGTGGGAAAATGAATTTCAAGAAGTAAAGAGCCAAATATCGGGGATTAAAGAGTTTGAAGGGA
AACTGGGAGAGAGTGCTGATACTCTTTATAATGCTCTCCAATTTCAAGATAAGCTGCTCGAAAGAATTGGAAAGCTTTAT
ACATATGCCCATATGCGTTATGACCAGGACACAACCAATTCCTTTTATCAGGGATTAGATGACAGGATGAAAAATTTGTA
TTCACAAGCGGGCAGTCAATTAGCCTTTATAGTTCCTGAAATTTTATCACTTGATGAAAATAAGGTAAATGGATTTATCA
ATGAAAAACCGGAACTAAAACTTTATGAGCATGCGATTGAGGAAATTAATCTTCAGCGGCCGCACGTTTTGTCAGCAGAG
ATGGAAGCGATGTTAGCGGAAGCTGGTGAAGTAATGGATGCTTCTAGTAACACTTTCGGAATGTTAAATAATGCAGATTT
AAAGTTCCCATCCGTAAAAGATGAAAGTGGTCAGGAGGTAGAAATTACCCATGGCCGTTATATCCGTTTTCTAGAAAGTG
CCGACCAAAGAGTACGCCATGATGCCTTTAAAGCTGTTTACGACACTTATGGAAAGTTCCGTAATACCTTCGCAAGTACA
ATTAGCGGGAATGTGAAAAAGGATAATTTTAATGCGAGAATTAGAAAATATGATTCTGCCAGGCATGCGGCACTTTCGGC
CAATAATATTCCTGAAAGCGTGTATGACAATTTAGTCAACACGGTAAACGATCATTTACACTTATTGCACCGTTACGTTA
AACTTAGAAAAAAAGTTTTAGGGGTAGACGAACTGCATATGTATGATCTCTACACTCCTCTTGTAAAAGATGTAAAAATG
GAAATTCCTTATAAACAAGCAGAGGAGCTTGTGATAAAAGGGCTTGCTCCATTGGGGGAGGAATATTCACAAATTCTAAA
AGAGGGATTTGAAAACCGCTGGGTAGATGTTCACGAAAATAAAGGAAAGCGAAGTGGCGCTTATTCTTCAGGAGCATATG
GAACAAATCCTTATATTCTTATGAATTGGCAGGATAATGTGAATAACTTATTTACCTTGGCTCATGAGTTTGGCCATTCT
GTCCATAGCTACTATACTAGAAAGAACCAGCCATATCCTTACGGAAACTATTCTATTTTTGTTGCAGAGGTGGCTTCAAC
CTGTAACGAAGCCTTATTAAATGATTATTTACTAAAAACAATTGATGATGAGCAAAAACGAATCTATTTATTAAATCATT
ATTTAGAAGGTTTTAGAGGCACTGTATTTCGTCAAACGATGTTTGCTGAATATGAGCATTTAATTCACCAGAAGGCTCAA
AATAATGAGGCCTTAACAGCAGATTCATTAACCGCTGAATATTATGCTTTGAATAAGAAGTATTTCGGTGAAGAGGATAT
AGTAATTGATGAGGAAATCGGCTTAGAATGGGCGAGAATTCCACATTTCTATTACAATTATTACGTATATCAATATGCTA
CTGGCTTTAGTGCAGCAACAGCATTAAGCAAGCAGATTCTAGATGAAGGAGAGCCAGCGGTTAAACGTTATATTGATTTC
TTAAGCGCAGGAAGCTCTGACTACCCAATTGAAGTACTAAAGAAAGCAGGAGTAGACATGACAAGCGCCGACCCAATCAG
AGACGCATGTAAAGTCTTCGAAGAAAAATTAAATGAATTAGAACAGTTATTATCATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.167

98.843

0.496