Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QNH29_RS00650 Genome accession   NZ_CP126093
Coordinates   130704..132086 (+) Length   460 a.a.
NCBI ID   WP_283863006.1    Uniprot ID   A0AA95RKV3
Organism   Neobacillus sp. DY30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 125704..137086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH29_RS00630 (QNH29_00630) - 126044..126505 (+) 462 WP_283863002.1 CtsR family transcriptional regulator -
  QNH29_RS00635 (QNH29_00635) - 126535..127083 (+) 549 WP_283863003.1 UvrB/UvrC motif-containing protein -
  QNH29_RS00640 (QNH29_00640) - 127085..128158 (+) 1074 WP_283863004.1 protein arginine kinase -
  QNH29_RS00645 (QNH29_00645) clpC 128172..130613 (+) 2442 WP_283863005.1 ATP-dependent protease ATP-binding subunit ClpC -
  QNH29_RS00650 (QNH29_00650) radA 130704..132086 (+) 1383 WP_283863006.1 DNA repair protein RadA Machinery gene
  QNH29_RS00655 (QNH29_00655) disA 132090..133163 (+) 1074 WP_283863007.1 DNA integrity scanning diadenylate cyclase DisA -
  QNH29_RS00660 (QNH29_00660) - 133364..134449 (+) 1086 WP_283863008.1 PIN/TRAM domain-containing protein -
  QNH29_RS00665 (QNH29_00665) ispD 134492..135181 (+) 690 WP_283863009.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QNH29_RS00670 (QNH29_00670) ispF 135184..135666 (+) 483 WP_283863010.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49889.45 Da        Isoelectric Point: 7.3695

>NTDB_id=835453 QNH29_RS00650 WP_283863006.1 130704..132086(+) (radA) [Neobacillus sp. DY30]
MVKRKTKFMCQECGYESPKWLGKCPGCGEWNKMVEEVEVTGGNRRGAFAHSQGGATLASKPTPITAIESLSEPRILTELN
ELNRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSSQLANKGNQVLYISGEESLRQTKLRAERLGIKSENLLVYAETNLDE
INRTIENSNPSFVIIDSIQTVFHPEVTSAPGSVSQVRECTSELMRIGKTKGIAIFIVGHVTKEGSIAGPRLLEHMVDTVL
YFEGERHHTYRILRAVKNRFGSTNEMGIFEMKEFGLDEVANPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALISPT
SFGNPRRMATGIDHNRVPLLMAVLEKRMGMLLQNQDAYLKVAGGVKLDEPAIDLAIVVSIASSFRDKPTRATDCIIGEVG
LTGEVRRVSRIEQRVQEAAKLGFERVILPANNLSGWQGPKGVELIGVSTVAEALKAVLGV

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=835453 QNH29_RS00650 WP_283863006.1 130704..132086(+) (radA) [Neobacillus sp. DY30]
ATGGTCAAACGAAAAACGAAGTTTATGTGTCAGGAGTGTGGATATGAATCTCCTAAATGGCTGGGGAAATGTCCAGGGTG
CGGGGAATGGAACAAAATGGTCGAGGAAGTTGAGGTAACAGGTGGAAATAGAAGAGGCGCCTTTGCCCATTCTCAGGGTG
GGGCAACACTAGCTTCAAAACCAACACCGATTACAGCGATTGAATCCTTGTCAGAACCGAGAATACTAACCGAACTAAAT
GAACTTAACCGAGTTTTAGGCGGAGGCGTGGTAAAAGGATCGCTGGTTTTAATCGGTGGTGACCCCGGCATCGGTAAATC
GACACTCCTATTACAAGTATCCTCACAGCTTGCTAATAAAGGGAATCAGGTCTTATACATATCTGGTGAGGAATCGCTGA
GGCAAACAAAGCTTCGAGCTGAAAGACTAGGGATTAAATCTGAAAACCTGCTCGTATATGCTGAAACCAATTTAGACGAA
ATAAACCGGACGATTGAAAACTCAAATCCTAGCTTTGTGATTATTGATTCCATACAAACCGTTTTCCACCCGGAAGTAAC
TTCCGCACCAGGGAGCGTTTCTCAAGTACGTGAATGTACATCTGAATTAATGCGGATTGGAAAAACGAAAGGAATTGCTA
TCTTTATTGTTGGTCATGTAACAAAAGAAGGGTCCATTGCAGGACCAAGACTGCTCGAACACATGGTAGATACTGTTCTC
TACTTTGAAGGGGAAAGGCATCATACGTATCGTATTTTACGTGCAGTAAAAAATCGTTTTGGATCAACCAATGAAATGGG
TATCTTCGAGATGAAAGAATTTGGACTTGATGAGGTTGCAAATCCATCGGAAATTTTCCTTGAAGAGCGGTCACAAGGTG
CTGCAGGCTCTACTGTGGTTGCCTCAATGGAAGGGACCCGTCCTGTACTAGTCGAAATCCAGGCGTTAATTTCTCCAACC
AGTTTTGGAAACCCAAGAAGGATGGCAACGGGGATTGATCATAACCGTGTTCCCCTATTAATGGCCGTTTTAGAGAAGCG
GATGGGAATGCTGCTTCAGAATCAAGATGCGTATCTTAAGGTTGCTGGAGGTGTGAAGTTAGACGAACCAGCTATTGATT
TGGCCATTGTTGTTAGTATTGCTTCAAGCTTCCGCGATAAACCGACAAGGGCAACGGATTGTATTATAGGAGAGGTTGGG
TTAACCGGAGAGGTTAGAAGAGTGTCCAGGATTGAACAGCGTGTTCAGGAAGCCGCAAAGTTAGGTTTCGAACGGGTTAT
TTTACCTGCTAATAATTTGAGCGGCTGGCAAGGTCCTAAAGGTGTAGAGTTAATTGGTGTGTCGACTGTAGCAGAAGCTT
TAAAAGCAGTGTTAGGGGTGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(366-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

76.522

100

0.765
  radA Streptococcus mitis NCTC 12261

62.826

100

0.628
  radA Streptococcus pneumoniae Rx1

62.826

100

0.628
  radA Streptococcus pneumoniae D39

62.826

100

0.628
  radA Streptococcus pneumoniae R6

62.826

100

0.628
  radA Streptococcus pneumoniae TIGR4

62.826

100

0.628
  radA Streptococcus mitis SK321

62.609

100

0.626