Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QNH50_RS24405 Genome accession   NZ_CP126092
Coordinates   4968014..4968964 (-) Length   316 a.a.
NCBI ID   WP_230300551.1    Uniprot ID   -
Organism   Peribacillus simplex strain D9_B_73     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4963014..4973964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH50_RS24390 (QNH50_24390) - 4965166..4966113 (-) 948 WP_283932359.1 siderophore ABC transporter substrate-binding protein -
  QNH50_RS24395 (QNH50_24395) - 4966322..4967080 (-) 759 WP_230300549.1 ABC transporter ATP-binding protein -
  QNH50_RS24400 (QNH50_24400) - 4967074..4968021 (-) 948 WP_283932360.1 iron chelate uptake ABC transporter family permease subunit -
  QNH50_RS24405 (QNH50_24405) ceuB 4968014..4968964 (-) 951 WP_230300551.1 ABC transporter permease Machinery gene
  QNH50_RS24410 (QNH50_24410) - 4969299..4969571 (+) 273 WP_230300552.1 DUF1450 domain-containing protein -
  QNH50_RS24415 (QNH50_24415) - 4969783..4971432 (+) 1650 WP_230300553.1 M14 family metallocarboxypeptidase -
  QNH50_RS24420 (QNH50_24420) shc 4971598..4973493 (+) 1896 WP_230300554.1 squalene--hopene cyclase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34910.20 Da        Isoelectric Point: 9.5025

>NTDB_id=835435 QNH50_RS24405 WP_230300551.1 4968014..4968964(-) (ceuB) [Peribacillus simplex strain D9_B_73]
MKIRYLVMALIVLSFTSLFIGVKDITPLDLLDLSDDKVQIMLQSRFPRMVTIVISGIVMSISGLIMQQLSRNKFVSPTTA
GTMDSARLGLLLAIIIFPSAALIEKMAFAFIFALAGTFLFMKILDQVKYKDTIFIPLVGLMFGNIVGSISTFFAYKYDLI
QSLNTWMNGDFSMIMSGRYELIYVSIPLVILAYFFANKFTVAGMGEEFAINLGLNYKLIVNFGLIIVALSSTVVLLTVGT
IPFIGLIVPNIVSLYLGDNLKKSLSHTALLGAVFLLICDILGRILIYPFEIPIGLVVGVIGSAVFIYLILRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=835435 QNH50_RS24405 WP_230300551.1 4968014..4968964(-) (ceuB) [Peribacillus simplex strain D9_B_73]
ATGAAGATAAGATATTTAGTCATGGCGTTAATTGTTTTATCATTTACGTCATTATTCATTGGTGTAAAAGATATTACCCC
CCTGGATTTATTGGATTTAAGTGATGATAAAGTGCAAATCATGCTGCAAAGCCGTTTCCCCAGAATGGTGACCATAGTCA
TTTCCGGTATTGTGATGAGTATAAGCGGTCTGATCATGCAGCAATTGAGCCGCAATAAATTTGTATCCCCGACGACTGCC
GGAACCATGGATTCTGCAAGGCTTGGACTTCTTCTTGCCATTATCATTTTTCCATCTGCAGCACTTATTGAGAAAATGGC
ATTCGCTTTCATATTCGCTTTGGCAGGTACCTTCTTGTTCATGAAAATTCTTGATCAAGTGAAATATAAGGATACGATTT
TCATCCCATTGGTTGGTTTGATGTTTGGTAATATCGTCGGATCCATCTCGACTTTCTTTGCTTATAAATATGATTTGATT
CAAAGCCTCAACACATGGATGAATGGAGATTTCTCGATGATCATGTCGGGAAGGTACGAACTTATATATGTAAGTATCCC
TCTAGTCATTCTCGCATACTTCTTTGCCAATAAATTCACTGTGGCAGGGATGGGTGAGGAGTTTGCCATCAATCTAGGAC
TCAATTATAAGCTTATAGTCAATTTTGGGTTGATCATCGTGGCATTATCCTCCACTGTCGTTTTGTTAACGGTGGGAACG
ATTCCTTTCATAGGATTGATCGTACCAAATATTGTATCCCTTTACCTTGGTGACAATTTGAAAAAGAGTCTTTCTCATAC
AGCATTGCTAGGGGCAGTATTCCTATTGATCTGCGATATTCTGGGCAGGATCCTCATATATCCATTTGAAATCCCGATCG
GACTCGTGGTTGGTGTGATAGGAAGCGCCGTATTTATCTATCTGATACTGAGGAGAAAGGCATATGAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

50

100

0.5