Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | QNH50_RS21750 | Genome accession | NZ_CP126092 |
| Coordinates | 4472928..4473284 (+) | Length | 118 a.a. |
| NCBI ID | WP_096340856.1 | Uniprot ID | - |
| Organism | Peribacillus simplex strain D9_B_73 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 4454484..4481253 | 4472928..4473284 | within | 0 |
Gene organization within MGE regions
Location: 4454484..4481253
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QNH50_RS21645 (QNH50_21645) | - | 4455205..4455555 (-) | 351 | WP_230303925.1 | hypothetical protein | - |
| QNH50_RS26300 | - | 4455960..4456199 (-) | 240 | WP_349654739.1 | hypothetical protein | - |
| QNH50_RS21655 (QNH50_21655) | - | 4456565..4457797 (+) | 1233 | WP_230304281.1 | IS110 family transposase | - |
| QNH50_RS21660 (QNH50_21660) | - | 4458585..4459046 (-) | 462 | WP_230303926.1 | GNAT family N-acetyltransferase | - |
| QNH50_RS21665 (QNH50_21665) | - | 4459657..4460166 (-) | 510 | WP_230303927.1 | MepB family protein | - |
| QNH50_RS21670 (QNH50_21670) | dfr | 4460313..4460804 (-) | 492 | WP_230303928.1 | DfrD/DfrG/DfrK family trimethoprim-resistant dihydrofolate reductase | - |
| QNH50_RS21675 (QNH50_21675) | - | 4460956..4461369 (-) | 414 | WP_230303929.1 | DUF2283 domain-containing protein | - |
| QNH50_RS21680 (QNH50_21680) | - | 4461534..4461956 (-) | 423 | WP_230303930.1 | hypothetical protein | - |
| QNH50_RS21685 (QNH50_21685) | - | 4462183..4463352 (-) | 1170 | WP_283932180.1 | serine hydrolase domain-containing protein | - |
| QNH50_RS21690 (QNH50_21690) | - | 4463748..4464431 (-) | 684 | WP_230303932.1 | hypothetical protein | - |
| QNH50_RS21695 (QNH50_21695) | - | 4464881..4465069 (-) | 189 | WP_230303933.1 | hypothetical protein | - |
| QNH50_RS21700 (QNH50_21700) | - | 4465215..4465391 (-) | 177 | WP_230303934.1 | DUF4083 family protein | - |
| QNH50_RS21705 (QNH50_21705) | - | 4465608..4466432 (+) | 825 | WP_230303935.1 | MBL fold metallo-hydrolase | - |
| QNH50_RS21710 (QNH50_21710) | - | 4466684..4466869 (-) | 186 | WP_230303936.1 | hypothetical protein | - |
| QNH50_RS21715 (QNH50_21715) | - | 4467018..4467974 (+) | 957 | WP_230303937.1 | patatin-like phospholipase family protein | - |
| QNH50_RS26305 | - | 4468178..4468399 (-) | 222 | WP_349654766.1 | DUF3953 domain-containing protein | - |
| QNH50_RS21725 (QNH50_21725) | - | 4468766..4470001 (+) | 1236 | WP_283932181.1 | IS110 family transposase | - |
| QNH50_RS21730 (QNH50_21730) | - | 4470702..4471082 (-) | 381 | WP_230304298.1 | hypothetical protein | - |
| QNH50_RS21735 (QNH50_21735) | - | 4471490..4472059 (-) | 570 | WP_283933112.1 | recombinase family protein | - |
| QNH50_RS21740 (QNH50_21740) | - | 4472180..4472437 (+) | 258 | WP_057277283.1 | DUF2533 family protein | - |
| QNH50_RS21745 (QNH50_21745) | - | 4472667..4472876 (+) | 210 | WP_251432330.1 | hypothetical protein | - |
| QNH50_RS21750 (QNH50_21750) | nucA/comI | 4472928..4473284 (+) | 357 | WP_096340856.1 | NucA/NucB deoxyribonuclease domain-containing protein | Machinery gene |
| QNH50_RS21755 (QNH50_21755) | - | 4473727..4474284 (-) | 558 | WP_283932182.1 | hypothetical protein | - |
| QNH50_RS21760 (QNH50_21760) | - | 4474573..4475085 (-) | 513 | WP_230304320.1 | hypothetical protein | - |
| QNH50_RS21765 (QNH50_21765) | - | 4475258..4475620 (-) | 363 | WP_230304321.1 | hypothetical protein | - |
| QNH50_RS21770 (QNH50_21770) | - | 4475958..4477193 (+) | 1236 | WP_283932183.1 | IS110 family transposase | - |
| QNH50_RS21775 (QNH50_21775) | - | 4477816..4478571 (-) | 756 | WP_148358479.1 | SDR family oxidoreductase | - |
| QNH50_RS21780 (QNH50_21780) | - | 4478626..4479408 (-) | 783 | WP_230303645.1 | MerR family transcriptional regulator | - |
| QNH50_RS21785 (QNH50_21785) | - | 4480018..4481253 (+) | 1236 | WP_283932181.1 | IS110 family transposase | - |
Sequence
Protein
Download Length: 118 a.a. Molecular weight: 13133.27 Da Isoelectric Point: 3.9017
>NTDB_id=835434 QNH50_RS21750 WP_096340856.1 4472928..4473284(+) (nucA/comI) [Peribacillus simplex strain D9_B_73]
MKVKECLSEESYNVVINFPSEKYPETAEHIEDAIADGSSNICTIDRNGADENRDESLENIQTRMGYDRDEYPMAMCEEGG
AGADIEYITPSDNRGAGSWVSHQLSDYPDGTKVLFVVE
MKVKECLSEESYNVVINFPSEKYPETAEHIEDAIADGSSNICTIDRNGADENRDESLENIQTRMGYDRDEYPMAMCEEGG
AGADIEYITPSDNRGAGSWVSHQLSDYPDGTKVLFVVE
Nucleotide
Download Length: 357 bp
>NTDB_id=835434 QNH50_RS21750 WP_096340856.1 4472928..4473284(+) (nucA/comI) [Peribacillus simplex strain D9_B_73]
ATCAAAGTAAAGGAGTGTTTATCTGAGGAAAGTTATAATGTTGTAATTAACTTTCCGTCAGAAAAGTACCCGGAGACAGC
TGAGCATATAGAAGATGCCATTGCTGATGGAAGTTCCAATATTTGTACCATTGATAGAAATGGAGCAGACGAGAACCGTG
ATGAATCTTTGGAAAATATTCAAACTAGAATGGGATATGATCGTGATGAATACCCAATGGCCATGTGTGAAGAAGGGGGA
GCGGGAGCAGATATTGAGTATATAACCCCATCAGACAATCGTGGTGCTGGCTCGTGGGTATCTCATCAATTAAGTGACTA
TCCCGATGGTACAAAGGTTTTATTCGTTGTAGAGTGA
ATCAAAGTAAAGGAGTGTTTATCTGAGGAAAGTTATAATGTTGTAATTAACTTTCCGTCAGAAAAGTACCCGGAGACAGC
TGAGCATATAGAAGATGCCATTGCTGATGGAAGTTCCAATATTTGTACCATTGATAGAAATGGAGCAGACGAGAACCGTG
ATGAATCTTTGGAAAATATTCAAACTAGAATGGGATATGATCGTGATGAATACCCAATGGCCATGTGTGAAGAAGGGGGA
GCGGGAGCAGATATTGAGTATATAACCCCATCAGACAATCGTGGTGCTGGCTCGTGGGTATCTCATCAATTAAGTGACTA
TCCCGATGGTACAAAGGTTTTATTCGTTGTAGAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
63.551 |
90.678 |
0.576 |