Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QNH50_RS16855 Genome accession   NZ_CP126092
Coordinates   3505169..3506884 (-) Length   571 a.a.
NCBI ID   WP_283931908.1    Uniprot ID   -
Organism   Peribacillus simplex strain D9_B_73     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3500169..3511884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH50_RS16835 (QNH50_16835) - 3500667..3501434 (-) 768 WP_253073900.1 FapA family protein -
  QNH50_RS16840 (QNH50_16840) - 3501442..3502245 (-) 804 WP_253073899.1 FapA family protein -
  QNH50_RS16845 (QNH50_16845) spo0A 3502593..3503384 (-) 792 WP_034308269.1 sporulation transcription factor Spo0A -
  QNH50_RS16850 (QNH50_16850) spoIVB 3503715..3505007 (-) 1293 WP_230302574.1 SpoIVB peptidase -
  QNH50_RS16855 (QNH50_16855) recN 3505169..3506884 (-) 1716 WP_283931908.1 DNA repair protein RecN Machinery gene
  QNH50_RS16860 (QNH50_16860) argR 3506907..3507356 (-) 450 WP_034308279.1 transcriptional regulator ArgR -
  QNH50_RS16865 (QNH50_16865) - 3507683..3508510 (-) 828 WP_230302572.1 TlyA family RNA methyltransferase -
  QNH50_RS16870 (QNH50_16870) dxs 3508515..3510407 (-) 1893 WP_098369845.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QNH50_RS16875 (QNH50_16875) - 3510658..3511551 (-) 894 WP_098369844.1 polyprenyl synthetase family protein -
  QNH50_RS16880 (QNH50_16880) - 3511553..3511786 (-) 234 WP_283931909.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64458.43 Da        Isoelectric Point: 5.2172

>NTDB_id=835417 QNH50_RS16855 WP_283931908.1 3505169..3506884(-) (recN) [Peribacillus simplex strain D9_B_73]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIEDEKHPVFAK
AEEFGIDMNDGMAILRRDISLSGKSVCRVNGKLVTISTLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKIASAL
TEYQKLYKRYETASKQLNGLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKNSSETVSNSYFLLEEAVSNIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEILEYGAAIEEEVEKLLNRETHIAKLEKEMKSIKADLIVEAKNLSELRQKFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIETEKIKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=835417 QNH50_RS16855 WP_283931908.1 3505169..3506884(-) (recN) [Peribacillus simplex strain D9_B_73]
TTGTTAACAGAACTATCGATTAGGAATTTTGCGATCATAGACAGCCTGTCCGTTTCATTTGAGAAAGGCTTGACGGTCTT
GACAGGAGAAACAGGGGCAGGGAAGTCAATCATAATAGATGCCGTTCATCTTTTGGTTGGGGGACGTGGTTCTGCAGAGT
TCATTCGGCATGGTGAGTCGAAGGCTGAAATAGAAGGATTATTCCAAATTGAAGATGAAAAACACCCGGTCTTTGCCAAA
GCGGAAGAGTTTGGCATCGATATGAATGATGGGATGGCGATACTTCGAAGGGATATCTCACTGAGCGGCAAAAGCGTTTG
CAGGGTAAATGGAAAGCTTGTAACGATTTCCACCTTACGTGAGATAGGACGGACGTTGATAGATATCCATGGTCAGCATG
AACATCAGGAATTAATGGACGAACGACTCCATCTTCCACTGCTCGATCAATTCGGCGGTGAAAAAATCGCATCTGCACTC
ACTGAATACCAAAAGCTATATAAACGTTATGAAACCGCTTCTAAACAATTGAATGGTTTGAGCCAAAATGAACAGCAAAT
GGTCCACCGCCTTGATTTGATCCAATTTCAATTCGATGAAATCCAAAAAGCTGATTTGAAATTACGCGAAGATGAAGAAT
TGATGGAAGAGCGGAAGAAAATTAATAATTTTGAAAAAATCCATGAAGCGCTGCAAACCAGTTATAATGCTTTAAATGGT
GAGCAGCATGCAATTGATTGGCTTTCCGTAGCCATGAATAATTTGGAGGAAGCGGCAGGGCTTGATGAAGGATTAAAGAA
CAGCTCTGAAACCGTTTCAAATAGCTACTTCCTGCTTGAAGAGGCCGTGTCCAACATCCGTGACCAATTAGACTCTTTGG
ATTATGATACAGAACGAGTGGAATTCATTGAAAGTCGCCTTAATGAAATAAATCAATTAAAGCGTAAATACGGGCGGACC
ATCGAGGAAATCCTGGAATATGGGGCCGCTATTGAAGAAGAAGTCGAAAAGCTGCTAAATAGGGAAACCCATATAGCGAA
GCTTGAAAAGGAAATGAAATCCATCAAGGCAGATTTAATTGTCGAAGCAAAGAATCTGTCTGAACTTCGCCAGAAATTTG
CTCAGCAGCTAACCAAAAAGATTCATCAGGAATTAAAAGATTTATACATGGAAAAGACAATTTTCGAACCACATTTCCTT
CAAACGGCCTATACTTTCGATGAATTGTCAGATAGGGGCATCAATCAGTCAGGGCTGGATTCAATGGAATTTTATATTTC
CACCAATCCAGGTGAACCATTAAAACCTCTTTCTAAAATCGCATCTGGTGGAGAGCTGTCTAGGATCATGCTGGCATTGA
AAAGCATATTCTCCAAGCACCAAGGTATAACGTCCATTATCTTTGATGAAGTGGACACAGGTGTGAGCGGACGGGTTGCG
CAATCCATTGCCGAAAAGATCTATAAAGTGGCAACTGGATCACAAGTACTGTGCATATCCCATTTGCCACAAGTGGCAGC
TATGGCGGATACTCACCTTTTCATAGCGAAAAATGTAAGGGCCGGACGCACGAATACATCGGTAAAGCCGTTAATTGAAA
CTGAAAAAATAAAAGAAATTGGCAGGATGATTTCAGGAGTAGAGATAACGGATTTGACGAAACAACATGCAAATGAATTA
ATCCAGCTTGCCAAAAGGCTGAAGATAACATCTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.938

100

0.615