Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QNH50_RS06310 Genome accession   NZ_CP126092
Coordinates   1299750..1301567 (+) Length   605 a.a.
NCBI ID   WP_283932685.1    Uniprot ID   -
Organism   Peribacillus simplex strain D9_B_73     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1294750..1306567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH50_RS06290 (QNH50_06290) spxA 1295071..1295466 (+) 396 WP_034314502.1 transcriptional regulator SpxA -
  QNH50_RS06295 (QNH50_06295) mecA 1295964..1296632 (+) 669 WP_034314498.1 adaptor protein MecA -
  QNH50_RS06300 (QNH50_06300) cls 1296747..1298255 (+) 1509 WP_283932683.1 cardiolipin synthase -
  QNH50_RS06305 (QNH50_06305) - 1298349..1299557 (+) 1209 WP_283932684.1 competence protein CoiA family protein -
  QNH50_RS06310 (QNH50_06310) pepF 1299750..1301567 (+) 1818 WP_283932685.1 oligoendopeptidase F Regulator
  QNH50_RS06315 (QNH50_06315) - 1302507..1303373 (-) 867 WP_283902725.1 ClpXP adapter SpxH family protein -
  QNH50_RS06320 (QNH50_06320) - 1303397..1303801 (-) 405 WP_230301487.1 globin -
  QNH50_RS06325 (QNH50_06325) - 1304032..1304697 (-) 666 WP_283932686.1 lytic transglycosylase domain-containing protein -
  QNH50_RS06330 (QNH50_06330) - 1304729..1305307 (-) 579 WP_283932687.1 CYTH domain-containing protein -
  QNH50_RS06335 (QNH50_06335) - 1305624..1306244 (+) 621 WP_034314484.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69796.16 Da        Isoelectric Point: 4.6827

>NTDB_id=835409 QNH50_RS06310 WP_283932685.1 1299750..1301567(+) (pepF) [Peribacillus simplex strain D9_B_73]
MAQETKANTLPSRSEIAPEDTWRLEDIFATEEDWEAAFKAVKEDLKKAEAHKGSLGESAEKLFAGLQLQDEVFEKLGKVY
SYSHMRNDQDTTNPFYQGMEDRAKALYAQAAAAFSYMVPELLSIDENKVEGFLEEKEDLKLYKHSLEEINLQRPHILSAE
QEELLAQASEVLDASGNTFGMLNNADLKFPTIKDEEGNEVEITHGRYISFLESEDRRVREEAFKGVYSKYGEFRNTFAST
LSGEVKNHNFNATVRKYDSARQAALSNNNIPETVYDNLVKTVNDNLPLLHRYLDLRKKVLQLDELHMYDLFTPLVKEVKM
EVTYDEAKDYVLKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLVHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTCNENLLNDYLLNSMEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHTIHLKAQ
NGEALTADMLTKEYYELNKKYFGENVTIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVKRYLEFL
KSGSSDYPIEVLKKAGVDMTKAEPVQEAMNVFEEKLNELEELLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=835409 QNH50_RS06310 WP_283932685.1 1299750..1301567(+) (pepF) [Peribacillus simplex strain D9_B_73]
ATGGCACAGGAAACAAAAGCGAATACATTACCTTCAAGAAGTGAAATAGCTCCTGAAGATACTTGGAGACTGGAAGATAT
CTTCGCAACCGAGGAAGATTGGGAAGCTGCCTTCAAAGCGGTAAAAGAAGACCTCAAGAAAGCGGAGGCACATAAAGGGT
CGTTGGGAGAAAGTGCAGAAAAATTATTTGCGGGCCTTCAACTCCAAGATGAGGTATTCGAGAAGCTAGGGAAAGTTTAT
TCTTATTCACATATGCGCAATGATCAAGATACAACCAATCCTTTTTATCAAGGGATGGAGGATCGGGCAAAAGCTTTATA
CGCCCAGGCAGCGGCTGCGTTTTCATATATGGTTCCTGAACTATTGAGCATTGATGAAAACAAAGTGGAAGGGTTTTTGG
AAGAAAAAGAAGATCTGAAATTATACAAACATTCTTTAGAGGAAATTAATCTTCAGAGACCCCATATCTTATCAGCAGAG
CAGGAAGAATTATTGGCGCAAGCATCAGAAGTACTTGATGCATCGGGCAATACTTTCGGTATGCTTAACAATGCCGATTT
GAAATTCCCGACCATCAAGGATGAAGAGGGAAATGAAGTGGAAATTACTCACGGAAGATATATCAGTTTTCTTGAGAGTG
AAGATCGCCGTGTACGTGAGGAGGCATTTAAAGGGGTATACAGCAAGTATGGAGAGTTCCGTAATACATTTGCTTCAACC
CTGTCAGGTGAGGTGAAAAACCACAACTTCAATGCCACGGTTCGAAAATATGATTCAGCACGCCAAGCGGCGTTAAGTAA
TAATAACATTCCGGAGACTGTATACGATAATCTCGTTAAAACGGTCAATGACAACTTGCCATTACTGCACCGTTATCTTG
ATTTACGTAAAAAAGTACTGCAATTAGACGAACTTCATATGTATGATCTATTCACTCCTCTTGTTAAAGAAGTAAAGATG
GAAGTGACATATGACGAGGCCAAAGATTATGTCCTTAAAGGTCTTGCTCCGCTTGGGGAGGACTATTTGAACGTTTTGAA
AGAGGGATTTGAAAACCGTTGGGTCGATGTGCATGAAAACAAAGGGAAACGAAGCGGTGCCTATTCTTCTGGTACATATG
GGACGAATCCTTATATTTTAATGAACTGGCAAAATAACGTCAATAACTTATTCACGCTCGTTCATGAGTTTGGGCATTCG
GTCCATAGCTACTATACACGTAAATATCAGCCATATCCATACGGGAATTATTCCATTTTTGTAGCGGAAGTTGCATCGAC
TTGTAATGAAAACCTGTTGAACGATTATTTACTGAATTCAATGGAAGATGAAAAGAAACGCATCTATTTATTGAATCATT
ACCTGGAAGGTTTCCGCGGCACATTGTTCCGGCAAACGATGTTTGCAGAGTTTGAACATACGATTCATTTAAAAGCTCAA
AATGGGGAAGCGTTGACAGCGGATATGCTTACTAAGGAATATTATGAGCTGAACAAGAAATACTTTGGAGAGAACGTGAC
CATTGATGAAGAAATCGGTTTGGAATGGGCGCGTATTCCACACTTCTACTATAATTACTATGTTTATCAATATGCAACAG
GAATCAGTGCAGCAACAGCATTGAGCAAGCAAATCCTTGAAGAAGGAGAGCCTGCTGTCAAAAGGTATCTGGAGTTCTTG
AAGTCAGGAAGTTCCGATTATCCGATAGAAGTGCTCAAAAAGGCTGGCGTCGATATGACAAAAGCTGAACCTGTACAAGA
AGCCATGAATGTATTCGAAGAAAAATTAAATGAGTTGGAAGAGCTTTTGAATAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(210-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.505

98.182

0.496