Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QNH50_RS00565 Genome accession   NZ_CP126092
Coordinates   106070..107458 (+) Length   462 a.a.
NCBI ID   WP_076372905.1    Uniprot ID   A0A9W4PDJ3
Organism   Peribacillus simplex strain D9_B_73     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 101070..112458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH50_RS00545 (QNH50_00545) - 101192..101653 (+) 462 WP_048677843.1 CtsR family transcriptional regulator -
  QNH50_RS00550 (QNH50_00550) - 101675..102226 (+) 552 WP_283932464.1 UvrB/UvrC motif-containing protein -
  QNH50_RS00555 (QNH50_00555) - 102223..103299 (+) 1077 WP_230301694.1 protein arginine kinase -
  QNH50_RS00560 (QNH50_00560) clpC 103429..105870 (+) 2442 WP_283932465.1 ATP-dependent protease ATP-binding subunit ClpC -
  QNH50_RS00565 (QNH50_00565) radA 106070..107458 (+) 1389 WP_076372905.1 DNA repair protein RadA Machinery gene
  QNH50_RS00570 (QNH50_00570) disA 107461..108534 (+) 1074 WP_076372903.1 DNA integrity scanning diadenylate cyclase DisA -
  QNH50_RS00575 (QNH50_00575) - 108760..109857 (+) 1098 WP_076372901.1 PIN/TRAM domain-containing protein -
  QNH50_RS00580 (QNH50_00580) ispD 109879..110568 (+) 690 WP_230301696.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QNH50_RS00585 (QNH50_00585) ispF 110583..111062 (+) 480 WP_230301697.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50175.81 Da        Isoelectric Point: 8.2345

>NTDB_id=835400 QNH50_RS00565 WP_076372905.1 106070..107458(+) (radA) [Peribacillus simplex strain D9_B_73]
MAVKKKTKFMCQSCGYESPKWMGKCPGCGEWNKMVEETEIVKPARKGAFTNSEVRGSGEREKAAPITTIQSEKEPRIKTD
LMELNRALGGGIVQGSLVLIGGDPGIGKSTLLLQVSSQLAHKQKKVLYISGEESVKQTKLRADRLGTMSENLFVYAETDM
DYIQQAITDVKPDLVIIDSIQTVYHSEVTSAPGSVSQVRECTASLMRIAKTNGIAIFIVGHVTKEGAIAGPRLLEHMVDT
VLYFEGERHHTYRIIRAVKNRFGSTNEMGIFEMKEHGLEEVANPSEIFLEERSQGASGSTVVASMEGTRPVLVEIQALIS
PTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAISIASSFRDKPTNPADCIIGE
VGLTGEVRRVSRIEQRVQEAAKLGFERVIIPANNIGGWTAPKGIKIVGVSSVSEALKQSLGG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=835400 QNH50_RS00565 WP_076372905.1 106070..107458(+) (radA) [Peribacillus simplex strain D9_B_73]
ATGGCTGTAAAGAAGAAAACAAAATTTATGTGTCAGTCTTGTGGATATGAGTCCCCAAAATGGATGGGGAAATGCCCAGG
ATGCGGTGAATGGAACAAAATGGTCGAGGAAACCGAAATCGTTAAACCTGCTAGAAAAGGCGCTTTTACCAATTCAGAGG
TTAGAGGTTCCGGGGAACGGGAGAAGGCAGCACCCATAACGACTATTCAATCAGAAAAAGAACCCCGGATTAAGACGGAT
TTAATGGAATTGAATCGTGCTCTTGGGGGCGGGATCGTACAGGGATCACTTGTATTGATCGGAGGGGACCCGGGTATCGG
TAAGTCCACCCTGCTTTTACAGGTATCATCCCAATTGGCGCATAAACAGAAAAAAGTGCTTTATATTTCAGGTGAAGAAT
CAGTCAAGCAGACCAAATTGAGAGCGGATCGGCTTGGGACCATGTCGGAAAATCTATTCGTTTATGCTGAAACCGATATG
GATTATATCCAACAGGCAATTACGGATGTAAAACCGGATTTGGTCATTATTGACTCCATTCAAACGGTATACCATTCGGA
GGTTACATCCGCCCCGGGAAGCGTTTCACAAGTGAGGGAGTGCACAGCCTCACTCATGCGCATTGCTAAAACGAACGGAA
TTGCGATTTTTATCGTCGGACACGTTACAAAGGAGGGGGCCATCGCGGGGCCACGGCTGCTTGAGCACATGGTTGATACT
GTATTATATTTTGAAGGTGAAAGACACCATACATATCGAATTATACGTGCGGTTAAAAATCGCTTTGGTTCGACGAATGA
GATGGGTATTTTTGAAATGAAAGAACATGGATTGGAAGAGGTCGCGAATCCATCGGAAATTTTCCTTGAAGAACGGTCGC
AGGGAGCCTCGGGTTCTACAGTCGTCGCGTCCATGGAGGGAACAAGGCCGGTGCTAGTCGAAATTCAAGCATTGATTTCA
CCTACGAGTTTTGGCAATCCGAGGCGAATGGCCACGGGAATCGACCACAATCGAGTTTCGCTTTTAATGGCTGTTCTGGA
AAAGAGAGTGGGCTTGCTGCTCCAAAACCAAGATGCGTATTTAAAGGTTGCTGGTGGTGTCAAGCTGGATGAACCTGCAA
TTGACCTCGCTGTCGCAATAAGCATTGCTTCAAGCTTCCGTGATAAACCAACAAACCCTGCCGATTGCATCATTGGTGAA
GTGGGGCTGACTGGTGAGGTAAGAAGGGTGTCAAGAATTGAACAAAGGGTGCAGGAAGCAGCAAAATTAGGGTTTGAGCG
GGTTATCATACCGGCTAATAATATAGGGGGATGGACCGCGCCGAAAGGGATTAAGATCGTTGGTGTTTCATCGGTTTCGG
AGGCTCTTAAACAATCGTTAGGGGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(369-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.174

99.567

0.768
  radA Streptococcus mitis NCTC 12261

62.418

98.485

0.615
  radA Streptococcus pneumoniae Rx1

61.978

98.485

0.61
  radA Streptococcus pneumoniae D39

61.978

98.485

0.61
  radA Streptococcus pneumoniae R6

61.978

98.485

0.61
  radA Streptococcus pneumoniae TIGR4

61.978

98.485

0.61
  radA Streptococcus mitis SK321

61.758

98.485

0.608