Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   QNH18_RS19300 Genome accession   NZ_CP126091
Coordinates   3739304..3740698 (-) Length   464 a.a.
NCBI ID   WP_144497830.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CEW 1W     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3734304..3745698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH18_RS19265 (QNH18_19265) flgL 3734491..3735402 (-) 912 WP_095292078.1 flagellar hook-associated protein FlgL -
  QNH18_RS19270 (QNH18_19270) flgK 3735413..3736936 (-) 1524 WP_144497829.1 flagellar hook-associated protein FlgK -
  QNH18_RS19275 (QNH18_19275) - 3736952..3737428 (-) 477 WP_023856391.1 flagellar protein FlgN -
  QNH18_RS19280 (QNH18_19280) flgM 3737447..3737713 (-) 267 WP_020453113.1 flagellar biosynthesis anti-sigma factor FlgM -
  QNH18_RS19285 (QNH18_19285) - 3737793..3738212 (-) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  QNH18_RS19290 (QNH18_19290) comFC 3738271..3739008 (-) 738 WP_283931483.1 double zinc ribbon domain-containing protein Machinery gene
  QNH18_RS19295 (QNH18_19295) - 3738965..3739249 (-) 285 WP_020453116.1 late competence development ComFB family protein -
  QNH18_RS19300 (QNH18_19300) comFA 3739304..3740698 (-) 1395 WP_144497830.1 DEAD/DEAH box helicase Machinery gene
  QNH18_RS19305 (QNH18_19305) - 3740822..3741664 (-) 843 WP_020453118.1 DegV family protein -
  QNH18_RS19310 (QNH18_19310) degU 3741784..3742473 (-) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  QNH18_RS19315 (QNH18_19315) degS 3742555..3743712 (-) 1158 WP_020453119.1 histidine kinase Regulator
  QNH18_RS19320 (QNH18_19320) - 3743935..3744573 (+) 639 WP_020453120.1 YigZ family protein -
  QNH18_RS19325 (QNH18_19325) - 3744588..3745667 (+) 1080 WP_020453121.1 LCP family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 53062.78 Da        Isoelectric Point: 9.7663

>NTDB_id=835386 QNH18_RS19300 WP_144497830.1 3739304..3740698(-) (comFA) [Bacillus paralicheniformis strain CEW 1W]
MIHIEHPASYSCELRSCLEQRHLLKSELPFPEPVIDWHIQEGLIKTEEGIKKTKRGFVCLRCGQHERFCFARYPCYRCNK
CCVYCRACVMMGRVSECTSLLTWRGHGRHEWAPVYTEWKGVLSAGQEKAAKSIIDAIRRKEELLIWAVCGSGKTELLFQG
IEFALNNGLRVCIATPRTDVVLELEPRFRHAFPGVEIAALYGGSPDVGTLSPLVISTTHQLLRYKEAFDVIILDEVDAFP
YSIDNTLQYAVKKSAKRQSAHIYLTATPSRDMKKRAESGKLHTVRIPARFHRSPLPEPTLIWCGNWERGLKRRKVPFRLK
KWLFKHQELQHPVFLFVPSIPVLKTVVSLLKKETFRAEGVYAEDPERNEKVNRFRKSKLEVLVTTTILERGVTVKKAQVG
VLGAESAVFSESALVQMAGRAGRHPEHTDGDVCFFHHGRTKSMNAARRHIQYMNKLSKKEMLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=835386 QNH18_RS19300 WP_144497830.1 3739304..3740698(-) (comFA) [Bacillus paralicheniformis strain CEW 1W]
GTGATTCACATCGAACATCCGGCATCCTATTCCTGTGAATTGCGGTCATGTTTGGAGCAGCGCCACCTTCTGAAAAGCGA
ACTTCCTTTTCCGGAACCTGTCATTGATTGGCATATCCAAGAAGGCCTGATAAAAACGGAGGAAGGCATTAAAAAAACGA
AGAGAGGCTTTGTTTGCTTGAGGTGCGGCCAGCACGAGCGCTTCTGTTTCGCTCGATATCCTTGCTATAGGTGCAATAAA
TGCTGCGTGTACTGCCGAGCCTGTGTCATGATGGGCAGGGTGAGCGAGTGTACGTCTCTGTTGACTTGGCGTGGACATGG
CAGACATGAATGGGCGCCTGTTTACACGGAGTGGAAAGGCGTACTTTCAGCCGGTCAGGAAAAAGCGGCAAAATCTATTA
TCGATGCTATACGCAGGAAAGAAGAGCTGTTGATCTGGGCGGTTTGCGGATCGGGAAAAACGGAACTTCTTTTTCAAGGG
ATCGAATTCGCGCTGAACAACGGTTTGAGAGTATGTATCGCCACTCCGAGAACAGACGTTGTGCTTGAGCTTGAACCGCG
GTTTCGCCACGCCTTTCCCGGGGTGGAAATCGCCGCTTTATACGGAGGGAGCCCAGACGTTGGAACTCTCTCGCCGCTTG
TCATTTCAACTACCCACCAGCTGCTCCGCTATAAAGAAGCATTTGACGTGATCATCTTAGATGAAGTGGATGCTTTTCCG
TATTCTATTGATAATACGCTGCAATACGCTGTTAAAAAATCGGCAAAACGGCAAAGCGCACATATCTATTTAACCGCCAC
GCCTTCTAGAGATATGAAGAAAAGGGCTGAGAGCGGAAAGCTGCACACCGTCCGTATTCCCGCAAGATTCCACCGCAGCC
CGCTGCCTGAACCTACATTGATTTGGTGCGGAAATTGGGAAAGGGGTTTGAAACGAAGAAAAGTTCCTTTTCGCCTCAAA
AAATGGCTTTTTAAGCACCAGGAACTGCAGCATCCGGTTTTTCTGTTTGTTCCCTCTATCCCTGTTCTTAAAACCGTGGT
CAGTCTGCTGAAAAAGGAAACATTTCGCGCAGAAGGAGTCTATGCCGAAGACCCTGAGAGAAATGAAAAAGTGAACCGGT
TTAGGAAAAGTAAGCTTGAGGTGCTCGTGACGACAACGATTTTGGAAAGAGGTGTAACCGTCAAAAAAGCACAGGTTGGA
GTATTGGGGGCAGAGTCGGCTGTTTTTTCGGAAAGCGCTCTTGTCCAAATGGCCGGCAGAGCCGGCAGGCATCCCGAGCA
CACAGATGGAGACGTCTGTTTCTTTCATCACGGCAGGACAAAGTCGATGAATGCGGCACGACGTCATATTCAATATATGA
ATAAACTGTCTAAAAAGGAAATGTTGATTGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(122-270)

Helicase conserved C-terminal domain (Helicase_C)

(322-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

56.987

98.707

0.563