Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QNH18_RS18590 Genome accession   NZ_CP126091
Coordinates   3603565..3603846 (-) Length   93 a.a.
NCBI ID   WP_020452985.1    Uniprot ID   A0AAW6KAP3
Organism   Bacillus paralicheniformis strain CEW 1W     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3598565..3608846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH18_RS18570 (QNH18_18570) smpB 3599377..3599850 (-) 474 WP_009329604.1 SsrA-binding protein SmpB -
  QNH18_RS18575 (QNH18_18575) rnr 3599966..3602269 (-) 2304 WP_283931478.1 ribonuclease R -
  QNH18_RS18580 (QNH18_18580) - 3602283..3603029 (-) 747 WP_035337713.1 carboxylesterase -
  QNH18_RS18585 (QNH18_18585) secG 3603170..3603400 (-) 231 WP_003185418.1 preprotein translocase subunit SecG -
  QNH18_RS18590 (QNH18_18590) abrB 3603565..3603846 (-) 282 WP_020452985.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QNH18_RS18595 (QNH18_18595) - 3603875..3604108 (-) 234 WP_164470226.1 helix-turn-helix transcriptional regulator -
  QNH18_RS18600 (QNH18_18600) - 3604261..3604662 (+) 402 WP_145654551.1 transcriptional regulator -
  QNH18_RS18605 (QNH18_18605) - 3604835..3605233 (+) 399 WP_023856314.1 helix-turn-helix transcriptional regulator -
  QNH18_RS18610 (QNH18_18610) - 3605282..3605959 (-) 678 WP_020452989.1 ABC transporter permease -
  QNH18_RS18615 (QNH18_18615) opuCC 3605976..3606893 (-) 918 WP_145654553.1 osmoprotectant ABC transporter substrate-binding lipoprotein OpuCC -
  QNH18_RS18620 (QNH18_18620) - 3606907..3607560 (-) 654 WP_145654554.1 ABC transporter permease -
  QNH18_RS18625 (QNH18_18625) - 3607582..3608721 (-) 1140 WP_145654555.1 betaine/proline/choline family ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10358.19 Da        Isoelectric Point: 6.3182

>NTDB_id=835383 QNH18_RS18590 WP_020452985.1 3603565..3603846(-) (abrB) [Bacillus paralicheniformis strain CEW 1W]
MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDGENIILTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAE
MLLEDMMAALSEK

Nucleotide


Download         Length: 282 bp        

>NTDB_id=835383 QNH18_RS18590 WP_020452985.1 3603565..3603846(-) (abrB) [Bacillus paralicheniformis strain CEW 1W]
GTGAAAAATACGGGAATTGTCCGGAGAATCGATGAGCTCGGCAGAGTCGTTCTCCCGGTCGAAATGCGCAGGGTGCTGAA
TATCAATGAAAAGGACCCGCTCGAAATATACACCGACGGAGAAAACATCATTTTGACAAAATACGCCGCCAACATGGCAT
GCTTGATGACCGGCGACATCACCACCAAAAATAAAACGTATGCGGGCGGCAAAATCGTACTCAGCCCAAGGGGAGCGGAA
ATGCTGCTGGAAGATATGATGGCGGCCTTGTCAGAAAAATGA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)

AbrB C-terminal domain (AbrB_C)

(53-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.044

97.849

0.548