Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FFF71_RS14640 Genome accession   NZ_AP024114
Coordinates   3044002..3044631 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain JML285     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3039002..3049631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FFF71_RS14625 (HmCmsJML285_2872) helD 3039244..3041298 (-) 2055 WP_001297106.1 DNA helicase IV -
  FFF71_RS14630 (HmCmsJML285_2873) yccF 3041421..3041867 (+) 447 WP_001261235.1 YccF domain-containing protein -
  FFF71_RS14635 (HmCmsJML285_2874) yccS 3041877..3044039 (+) 2163 WP_000875023.1 YccS family putative transporter -
  FFF71_RS14640 (HmCmsJML285_2875) sxy/tfoX 3044002..3044631 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  FFF71_RS14645 (HmCmsJML285_2876) sulA 3044850..3045359 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  FFF71_RS14650 (HmCmsJML285_2878) ompA 3045716..3046768 (+) 1053 WP_001307702.1 porin OmpA -
  FFF71_RS14655 (HmCmsJML285_2879) matP 3046844..3047296 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  FFF71_RS14660 (HmCmsJML285_2880) ycbZ 3047482..3049242 (+) 1761 WP_040090211.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=83538 FFF71_RS14640 WP_000839153.1 3044002..3044631(-) (sxy/tfoX) [Escherichia coli strain JML285]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=83538 FFF71_RS14640 WP_000839153.1 3044002..3044631(-) (sxy/tfoX) [Escherichia coli strain JML285]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment