Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QNH18_RS13150 Genome accession   NZ_CP126091
Coordinates   2598837..2600567 (-) Length   576 a.a.
NCBI ID   WP_020452128.1    Uniprot ID   A0AAW6KD18
Organism   Bacillus paralicheniformis strain CEW 1W     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2593837..2605567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH18_RS13125 (QNH18_13125) - 2594171..2594476 (-) 306 WP_026579325.1 membrane lipoprotein lipid attachment site-containing protein -
  QNH18_RS13130 (QNH18_13130) - 2594968..2595540 (-) 573 WP_224067275.1 serine acetyltransferase -
  QNH18_RS13135 (QNH18_13135) - 2595653..2595949 (-) 297 WP_020452126.1 antimicrobial peptide LCI -
  QNH18_RS13140 (QNH18_13140) spo0A 2596282..2597082 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  QNH18_RS13145 (QNH18_13145) spoIVB 2597372..2598622 (-) 1251 WP_031304732.1 SpoIVB peptidase -
  QNH18_RS13150 (QNH18_13150) recN 2598837..2600567 (-) 1731 WP_020452128.1 DNA repair protein RecN Machinery gene
  QNH18_RS13155 (QNH18_13155) argR 2600599..2601048 (-) 450 WP_020452129.1 transcriptional regulator ArgR -
  QNH18_RS13160 (QNH18_13160) - 2601212..2602057 (-) 846 WP_020452130.1 TlyA family RNA methyltransferase -
  QNH18_RS13165 (QNH18_13165) dxs 2602054..2603955 (-) 1902 WP_101561072.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QNH18_RS13170 (QNH18_13170) - 2604188..2605078 (-) 891 WP_023855167.1 polyprenyl synthetase family protein -
  QNH18_RS13175 (QNH18_13175) - 2605068..2605328 (-) 261 WP_023855168.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64604.45 Da        Isoelectric Point: 4.8363

>NTDB_id=835363 QNH18_RS13150 WP_020452128.1 2598837..2600567(-) (recN) [Bacillus paralicheniformis strain CEW 1W]
MLAELSIKNFAIIEELTVSFEKGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEYVRYGEKRAELEGLFLLDSGHPVFDLC
TELGIEASDDMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQHDNQLLMEDEHHLQLLDRFAGEEIEHALK
AYQEVYSRYMDVMRKVKELSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLQEERRQIANFEKIYEALQNAYNALRNE
QAGLDWVGMASSELENVSGINEGLNKVSESVANAYYILEDSTFQIRNMLDELEYDPERLDYIESRLNEIKQLKRKYGATV
EDIQAYSAKIEEEIDRIENRDSHLQALKSRLESIGKDVAIEAANVSEIRKKWAKKLAKQIQQELKDLYMEKSTFDTEFQV
KKAERDDDAPVVNGMPVQLTKHGIDTVHFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLITKQSKDGRTTTSVTPLTKQEKIAEIGRMIAGVEVTDLTKR
HAKELLNQAKLVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=835363 QNH18_RS13150 WP_020452128.1 2598837..2600567(-) (recN) [Bacillus paralicheniformis strain CEW 1W]
TTGTTAGCTGAATTATCGATCAAAAACTTTGCCATTATCGAAGAATTAACCGTTTCTTTTGAAAAAGGGCTGACGGTTCT
GACCGGTGAAACCGGGGCCGGAAAATCGATCATCATCGACGCCGTCTCTTTGCTTGTCGGAGGCCGCGGCTCGTCCGAAT
ATGTCAGGTATGGCGAAAAAAGAGCCGAATTGGAAGGGCTTTTCCTCCTTGACAGCGGTCATCCGGTTTTTGATTTGTGC
ACAGAACTGGGGATTGAAGCCTCGGATGACATGATCGTTATGAGGAGAGATATTAACGCAAACGGCAAGAGCATCTGCCG
CGTCAATGGAAAACTTGTCACCATTGCCGCTTTGCGGGAAGTCGGCAGACTGCTGCTTGACATACACGGGCAGCACGACA
ATCAGCTGCTGATGGAGGATGAGCACCATCTTCAGCTTCTGGACAGGTTTGCAGGAGAAGAAATCGAGCATGCTCTAAAA
GCGTATCAGGAAGTTTACAGCCGCTACATGGACGTCATGAGAAAGGTGAAAGAGCTTTCTGAAAGCGAGCAGGAAATGGC
TCACAGACTCGATTTAATACAGTTTCAGCTTGATGAAATCGAATCTGCAAACCTTGAGCCGAAAGAGGACGAACTTCTTC
AGGAAGAGCGCCGTCAAATCGCTAATTTCGAAAAAATATACGAAGCTCTGCAAAATGCCTATAATGCGCTACGCAACGAG
CAGGCTGGGCTTGACTGGGTCGGCATGGCTTCAAGCGAGCTTGAAAACGTCTCAGGCATCAATGAAGGGCTCAATAAAGT
ATCTGAATCCGTAGCCAACGCATACTACATTCTCGAAGATTCAACTTTTCAGATCAGAAATATGCTGGATGAACTCGAAT
ACGACCCCGAGCGCCTCGATTATATCGAATCGCGATTAAACGAAATCAAACAGCTGAAACGCAAATACGGCGCTACTGTC
GAAGATATCCAAGCTTATTCGGCTAAGATAGAGGAAGAGATCGACCGGATCGAAAACCGGGACAGCCACTTGCAGGCATT
AAAATCCCGCCTCGAATCAATCGGCAAGGATGTGGCGATTGAAGCCGCCAATGTGTCCGAAATCAGAAAAAAATGGGCGA
AAAAACTGGCCAAACAGATTCAGCAGGAACTGAAAGATCTGTATATGGAAAAATCGACATTCGATACGGAATTCCAGGTG
AAAAAAGCGGAACGGGATGATGATGCACCCGTCGTCAACGGTATGCCGGTTCAGCTCACAAAGCACGGCATTGATACCGT
CCATTTCCTAATCTCAACAAACACGGGAGAACCGCTCAAATCTTTGTCAAAGGTTGCATCTGGAGGAGAGCTGTCAAGAA
TCATGCTGGCCATGAAAAGCATTTTCTCTGCTCAGCAGGATGTTACATCGATCATTTTCGATGAAGTGGATACGGGTGTA
AGCGGCAGAGTCGCGCAGGCGATCGCCGAAAAAATACACCGCGTCTCGATCGGCTCTCAAGTTTTATGCATTACCCACTT
GCCGCAGGTGGCCGCGATGGCTGACACCCATCTTTTGATTACGAAACAGTCGAAAGACGGGAGAACGACGACAAGCGTCA
CGCCGTTGACAAAACAGGAAAAAATAGCGGAAATCGGCCGGATGATCGCCGGAGTCGAAGTAACGGATCTGACGAAGCGC
CATGCGAAAGAACTTTTGAACCAAGCTAAGCTTGTTAAAACTACCGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

81.424

100

0.814