Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   QNH18_RS10070 Genome accession   NZ_CP126091
Coordinates   1985435..1985911 (+) Length   158 a.a.
NCBI ID   WP_026579660.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CEW 1W     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1980435..1990911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH18_RS10035 (QNH18_10035) - 1980548..1980976 (+) 429 WP_026579666.1 HIT domain-containing protein -
  QNH18_RS10040 (QNH18_10040) - 1981606..1981908 (+) 303 WP_026579664.1 hypothetical protein -
  QNH18_RS10045 (QNH18_10045) - 1982142..1983122 (+) 981 WP_219192674.1 alpha/beta hydrolase family protein -
  QNH18_RS10050 (QNH18_10050) - 1983182..1983403 (+) 222 WP_026579662.1 hypothetical protein -
  QNH18_RS10055 (QNH18_10055) - 1983514..1984110 (+) 597 WP_023857610.1 class I SAM-dependent methyltransferase -
  QNH18_RS10060 (QNH18_10060) - 1984216..1984698 (+) 483 WP_026579661.1 DUF4944 domain-containing protein -
  QNH18_RS10065 (QNH18_10065) - 1984732..1985304 (+) 573 WP_023857608.1 GNAT family N-acetyltransferase -
  QNH18_RS10070 (QNH18_10070) rok 1985435..1985911 (+) 477 WP_026579660.1 hypothetical protein Regulator
  QNH18_RS10075 (QNH18_10075) - 1986557..1987177 (-) 621 WP_026579659.1 hypothetical protein -
  QNH18_RS10080 (QNH18_10080) - 1987738..1988322 (+) 585 WP_020451571.1 TetR family transcriptional regulator -
  QNH18_RS10085 (QNH18_10085) - 1988403..1988735 (+) 333 WP_020451572.1 multidrug efflux SMR transporter -
  QNH18_RS10090 (QNH18_10090) - 1988738..1989055 (+) 318 WP_020451573.1 multidrug efflux SMR transporter -
  QNH18_RS10095 (QNH18_10095) speG 1989084..1989626 (+) 543 WP_020451574.1 spermidine N1-acetyltransferase -
  QNH18_RS10100 (QNH18_10100) - 1989663..1990019 (-) 357 WP_026579658.1 YxeA family protein -
  QNH18_RS10105 (QNH18_10105) - 1990199..1990639 (+) 441 WP_026579657.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18313.17 Da        Isoelectric Point: 10.0055

>NTDB_id=835359 QNH18_RS10070 WP_026579660.1 1985435..1985911(+) (rok) [Bacillus paralicheniformis strain CEW 1W]
MFDEREALRLRLEQLGDAEIQVMRELRKERQDIYSKLRELDRESDPAINKKSSLIDLASAAAEELKQSQIAADKHPPIKT
PSHTIFQSKTTIQREAALNILSRYEEGLKGIKLKTEIEKETGFPIKNMTTFMKSLMKHRPDIKKPARGHYILQKEKDL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=835359 QNH18_RS10070 WP_026579660.1 1985435..1985911(+) (rok) [Bacillus paralicheniformis strain CEW 1W]
ATGTTCGACGAAAGAGAAGCGTTGCGTTTGAGACTTGAACAGCTAGGTGATGCGGAGATTCAGGTGATGCGGGAATTGCG
AAAAGAACGACAGGACATTTATTCGAAGCTGCGTGAATTGGACCGGGAGAGTGATCCCGCAATTAACAAAAAATCTTCAT
TGATCGACTTGGCAAGCGCTGCAGCAGAGGAATTAAAACAATCCCAAATTGCCGCTGACAAACATCCGCCCATCAAGACT
CCATCTCATACTATTTTCCAATCAAAAACAACCATACAGCGCGAGGCTGCCTTAAACATTTTAAGCCGCTATGAAGAGGG
CTTGAAAGGCATTAAGCTCAAAACTGAAATCGAGAAAGAAACCGGCTTTCCGATTAAAAACATGACGACATTTATGAAGA
GCTTAATGAAACATCGCCCAGATATTAAAAAGCCTGCCCGCGGCCATTATATTTTGCAAAAAGAAAAAGACCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

43.407

100

0.5