Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QNH18_RS08240 Genome accession   NZ_CP126091
Coordinates   1627773..1628060 (+) Length   95 a.a.
NCBI ID   WP_095290390.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CEW 1W     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1622773..1633060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH18_RS08220 (QNH18_08220) - 1624434..1624808 (+) 375 WP_020451232.1 nuclear transport factor 2 family protein -
  QNH18_RS08225 (QNH18_08225) - 1624933..1626165 (-) 1233 WP_023857280.1 aminopeptidase -
  QNH18_RS08230 (QNH18_08230) - 1626255..1626386 (-) 132 WP_003181378.1 protein YkpC -
  QNH18_RS08235 (QNH18_08235) mreBH 1626460..1627467 (-) 1008 WP_020451234.1 rod-share determining protein MreBH -
  QNH18_RS08240 (QNH18_08240) abrB 1627773..1628060 (+) 288 WP_095290390.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QNH18_RS08245 (QNH18_08245) - 1628228..1629565 (+) 1338 WP_095290392.1 ATP-binding protein -
  QNH18_RS08250 (QNH18_08250) - 1629629..1630291 (+) 663 WP_095290394.1 TrkA family potassium uptake protein -
  QNH18_RS08255 (QNH18_08255) ade 1630419..1632140 (+) 1722 WP_283931665.1 adenine deaminase -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10654.49 Da        Isoelectric Point: 5.8979

>NTDB_id=835354 QNH18_RS08240 WP_095290390.1 1627773..1628060(+) (abrB) [Bacillus paralicheniformis strain CEW 1W]
MKAIGVVRKVDELGRIVMPIELRRALDISIKDSIEFFVDQDKIVLKKYKPHGVCLMTGEITSENREYGNGKITLSPEGAE
LLLEEIRAALNEVKA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=835354 QNH18_RS08240 WP_095290390.1 1627773..1628060(+) (abrB) [Bacillus paralicheniformis strain CEW 1W]
TTGAAAGCAATTGGAGTTGTGAGAAAAGTAGACGAACTCGGCCGGATCGTGATGCCGATTGAATTGAGAAGAGCTTTGGA
TATTTCGATCAAGGACAGCATCGAATTCTTTGTCGACCAAGATAAAATTGTCCTGAAAAAATATAAACCGCACGGTGTGT
GCCTGATGACCGGTGAAATCACTTCTGAAAACCGCGAGTACGGAAACGGGAAAATTACGCTGAGTCCTGAGGGGGCCGAA
TTGCTTTTGGAAGAAATAAGAGCTGCCTTAAACGAAGTGAAAGCATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.255

98.947

0.537