Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QNH18_RS05960 Genome accession   NZ_CP126091
Coordinates   1187988..1188566 (+) Length   192 a.a.
NCBI ID   WP_026579946.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CEW 1W     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1182988..1193566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH18_RS05940 (QNH18_05940) - 1183486..1184778 (-) 1293 WP_283931624.1 globin-coupled sensor protein -
  QNH18_RS05945 (QNH18_05945) - 1184885..1186414 (-) 1530 WP_026579947.1 FAD-dependent oxidoreductase -
  QNH18_RS05950 (QNH18_05950) - 1186556..1187413 (+) 858 WP_020450827.1 SDR family oxidoreductase -
  QNH18_RS05955 (QNH18_05955) - 1187482..1187715 (-) 234 WP_020450828.1 IDEAL domain-containing protein -
  QNH18_RS05960 (QNH18_05960) comK 1187988..1188566 (+) 579 WP_026579946.1 competence protein ComK Regulator
  QNH18_RS05965 (QNH18_05965) - 1188560..1188925 (-) 366 WP_020450830.1 hypothetical protein -
  QNH18_RS05970 (QNH18_05970) - 1189133..1189744 (+) 612 WP_020450831.1 TVP38/TMEM64 family protein -
  QNH18_RS05975 (QNH18_05975) lepB 1189757..1190275 (+) 519 WP_020450832.1 signal peptidase I -
  QNH18_RS05980 (QNH18_05980) - 1190407..1192182 (-) 1776 WP_161513196.1 S8 family peptidase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22420.64 Da        Isoelectric Point: 8.6274

>NTDB_id=835340 QNH18_RS05960 WP_026579946.1 1187988..1188566(+) (comK) [Bacillus paralicheniformis strain CEW 1W]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILETDRTFRVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSITSFENQVYRTAWLRTKFIDRIEGN
AMQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=835340 QNH18_RS05960 WP_026579946.1 1187988..1188566(+) (comK) [Bacillus paralicheniformis strain CEW 1W]
ATGAGCACAGAGGATATGACAAAAGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTCGAGACCGACAGGACTTTCCGCGTCAATATGAAGCCGTTTCAGATCATCGAAAGAAGCT
GCCGCTATTTCGGGTCGAGCTATGCGGGGAGAAAAGCGGGCACATATGAGGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAATATTTTTCTTTTTCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCACATCTTTTGAAAACCAGGTTTACCGAACGGCATGGTTGAGAACAAAATTTATCGACCGGATTGAAGGAAAC
GCCATGCAGAAGAAACAGGAATTTATGCTTTATCCGAAGGAAGACCGGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.617

97.917

0.672