Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QNH18_RS02400 Genome accession   NZ_CP126091
Coordinates   477701..478654 (+) Length   317 a.a.
NCBI ID   WP_026580546.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CEW 1W     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 472701..483654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH18_RS02385 (QNH18_02385) - 472749..474176 (+) 1428 WP_075213083.1 HAMP domain-containing sensor histidine kinase -
  QNH18_RS02390 (QNH18_02390) - 474208..475926 (-) 1719 WP_256164243.1 methyl-accepting chemotaxis protein -
  QNH18_RS02395 (QNH18_02395) - 476062..477423 (-) 1362 WP_026580545.1 aspartate kinase -
  QNH18_RS02400 (QNH18_02400) ceuB 477701..478654 (+) 954 WP_026580546.1 ABC transporter permease Machinery gene
  QNH18_RS02405 (QNH18_02405) - 478644..479588 (+) 945 WP_059231855.1 iron chelate uptake ABC transporter family permease subunit -
  QNH18_RS02410 (QNH18_02410) - 479588..480346 (+) 759 WP_020450172.1 ABC transporter ATP-binding protein -
  QNH18_RS02415 (QNH18_02415) - 480361..481308 (+) 948 WP_023855630.1 siderophore ABC transporter substrate-binding protein -
  QNH18_RS02420 (QNH18_02420) - 481490..482911 (-) 1422 WP_026580547.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35107.47 Da        Isoelectric Point: 10.1004

>NTDB_id=835333 QNH18_RS02400 WP_026580546.1 477701..478654(+) (ceuB) [Bacillus paralicheniformis strain CEW 1W]
MKLRYLLLMLIILSISSIFIGVKELSPLDLFRFNEDEIQTLYISRIPRLISIVLAGMSLSICGLIMQQLTRNKFVSPTTA
GTMDWARLGVIIAIVLFSSAGIVVKILFAFVFALFGSFLFVKILDRIKFKDAIFIPLVGMMLGSVVSAISTFMAYQYNII
QNVNAWFEGNFSLVMKGRYELLFLSIPLVIIAYLFANKFTLAGMGESFSINLGLNYKRVVNIGLIIVSIISSVVILTVGT
LPFLGLIIPNIVSIYRGDHLKNSLPHTAVLGAVFVLFCDIAGRLVIYPYEISVGLMVGIIGSGVFLYLLLRRKAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=835333 QNH18_RS02400 WP_026580546.1 477701..478654(+) (ceuB) [Bacillus paralicheniformis strain CEW 1W]
ATGAAATTACGATACTTATTGCTAATGCTCATCATTCTTTCAATCAGCTCGATTTTCATCGGCGTTAAGGAGCTTTCGCC
TCTTGATCTTTTCCGCTTTAACGAGGACGAAATTCAAACGCTTTACATAAGTAGAATTCCGCGCTTGATTAGCATCGTGC
TTGCGGGAATGAGCTTGAGCATTTGCGGGCTGATCATGCAGCAGCTGACGCGCAATAAATTTGTTTCACCGACCACCGCT
GGAACGATGGATTGGGCGAGGCTCGGTGTGATCATTGCGATCGTGCTTTTTTCGTCTGCAGGAATTGTGGTTAAAATACT
GTTTGCCTTTGTTTTTGCACTGTTTGGCAGTTTTTTGTTCGTCAAAATTTTGGACAGAATCAAGTTCAAAGATGCGATCT
TCATCCCTCTCGTCGGTATGATGCTCGGAAGTGTTGTCAGCGCCATCTCCACTTTCATGGCTTATCAGTACAATATCATT
CAAAACGTCAATGCATGGTTTGAAGGGAATTTTTCGCTTGTCATGAAGGGGAGGTATGAGCTCTTATTTCTGAGTATACC
GCTCGTTATCATTGCCTATCTGTTCGCCAATAAATTTACGTTGGCCGGGATGGGGGAGTCTTTTTCCATCAATCTTGGAT
TGAATTATAAGCGGGTGGTCAATATCGGATTGATCATCGTATCTATTATTTCGTCCGTCGTCATCCTGACGGTCGGCACG
CTTCCCTTTTTGGGTTTGATCATCCCGAACATCGTGTCCATCTACAGGGGAGATCATTTGAAAAACAGCCTGCCTCATAC
GGCGGTTCTCGGAGCCGTTTTCGTCTTGTTTTGCGATATAGCGGGACGTCTCGTCATTTACCCGTACGAAATTTCGGTTG
GTTTGATGGTCGGCATCATCGGGAGCGGCGTTTTTCTTTACTTGCTTTTAAGGAGAAAAGCCTATGCGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.582

99.685

0.514