Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   QNH18_RS00020 Genome accession   NZ_CP126091
Coordinates   3054..4166 (+) Length   370 a.a.
NCBI ID   WP_016885621.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain CEW 1W     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH18_RS00005 (QNH18_00005) dnaA 1..1341 (+) 1341 WP_023856797.1 chromosomal replication initiator protein DnaA -
  QNH18_RS00010 (QNH18_00010) dnaN 1519..2655 (+) 1137 WP_283931508.1 DNA polymerase III subunit beta -
  QNH18_RS00015 (QNH18_00015) yaaA 2822..3037 (+) 216 WP_003178084.1 S4 domain-containing protein YaaA -
  QNH18_RS00020 (QNH18_00020) recF 3054..4166 (+) 1113 WP_016885621.1 DNA replication/repair protein RecF Machinery gene
  QNH18_RS00025 (QNH18_00025) - 4184..4426 (+) 243 WP_023856795.1 extracellular matrix/biofilm biosynthesis regulator RemA family protein -
  QNH18_RS00030 (QNH18_00030) gyrB 4487..6400 (+) 1914 WP_031305110.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  QNH18_RS00035 (QNH18_00035) gyrA 6592..9060 (+) 2469 WP_023856793.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42482.33 Da        Isoelectric Point: 6.7331

>NTDB_id=835325 QNH18_RS00020 WP_016885621.1 3054..4166(+) (recF) [Bacillus paralicheniformis strain CEW 1W]
MYIQNITLSSYRNYERLDLQFENKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGS
VPIQLVISKKGKKGKVNHIEQQKLSQYVGAVNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDQTMLDVLTEQLTEFAAKVVMKRLQFVDQLEKWAQPIHSGISRGLEELTLKYHTSLHVSDSPDLSKM
INSYQETFSKLRDKEIERGVSLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIQEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHKTLNEAEIFRVENGTLSD

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=835325 QNH18_RS00020 WP_016885621.1 3054..4166(+) (recF) [Bacillus paralicheniformis strain CEW 1W]
TTGTATATCCAAAATATTACATTATCATCTTACCGTAATTATGAGCGCCTTGACCTTCAATTTGAGAACAAAGTGAATGT
GATTATCGGAGAGAACGCTCAAGGAAAAACGAATTTGATGGAAGCGATCTATGTGCTTGCGATGGCGAAATCCCATCGGA
CGTCAAATGATAAAGAACTCATACGATGGGATGAAGACTATGCTAAAATAGAAGGCAGGGTCATTAAAAAAAACGGTTCT
GTTCCCATTCAGCTCGTGATTTCCAAAAAAGGAAAAAAAGGTAAAGTCAATCATATTGAACAGCAGAAGCTGAGCCAGTA
TGTCGGGGCTGTCAACACGATTATGTTCGCGCCGGAGGATTTAAATCTTGTAAAAGGAAGTCCTCAGGTCAGAAGAAGGT
TTCTCGATATGGAAATCGGCCAAGTATCACCTGTCTATCTTCATGACCTTTCTCTTTACCAAAAAATCCTTTCACAACGG
AATCATTTCCTGAAACAGCTTCAAACAAGAAAGCAAACCGACCAAACGATGCTTGACGTGCTGACGGAACAGCTTACGGA
ATTCGCGGCAAAGGTTGTGATGAAACGGCTTCAGTTTGTCGATCAGCTTGAAAAATGGGCTCAGCCCATTCATTCCGGAA
TTTCAAGAGGTCTGGAAGAGCTGACGTTAAAGTATCATACGTCTCTTCACGTATCAGATTCGCCCGATTTGTCGAAAATG
ATCAATAGTTATCAAGAAACGTTTTCTAAATTAAGAGATAAAGAAATAGAACGGGGGGTATCTCTGTCAGGTCCCCACAG
GGATGATGTTCTCTTCTACGTCAATGGCCGTGATGTGCAGACTTACGGATCGCAGGGCCAGCAGCGAACGACTGCTTTGT
CGCTTAAATTGGCTGAAATCGATTTGATTCAGGAAGAGATAGGAGAATATCCGATTCTGCTTTTGGATGATGTTTTATCA
GAGCTGGACGACTATCGGCAGTCTCACTTGCTCCACACCATTCAAGGCCGTGTTCAAACATTCGTAACAACGACAAGCGT
TGATGGAATTGATCATAAAACCTTAAACGAAGCGGAAATCTTTCGAGTTGAAAATGGCACGCTATCGGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

88.859

99.459

0.884