Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QNH21_RS11480 Genome accession   NZ_CP126090
Coordinates   2276338..2276673 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain CEW AP102     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2271338..2281673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH21_RS11460 (QNH21_11460) gcvT 2271817..2272914 (-) 1098 WP_024427995.1 glycine cleavage system aminomethyltransferase GcvT -
  QNH21_RS11465 (QNH21_11465) - 2273475..2275145 (+) 1671 WP_133744192.1 SNF2-related protein -
  QNH21_RS11470 (QNH21_11470) - 2275160..2275957 (+) 798 WP_283859496.1 YqhG family protein -
  QNH21_RS11475 (QNH21_11475) - 2276140..2276304 (+) 165 WP_073206269.1 anti-repressor SinI family protein -
  QNH21_RS11480 (QNH21_11480) sinR 2276338..2276673 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  QNH21_RS11485 (QNH21_11485) - 2276741..2277541 (-) 801 WP_024422970.1 TasA family protein -
  QNH21_RS11490 (QNH21_11490) - 2277596..2278168 (-) 573 WP_024422971.1 signal peptidase I -
  QNH21_RS11495 (QNH21_11495) tapA 2278221..2278748 (-) 528 WP_133744194.1 amyloid fiber anchoring/assembly protein TapA -
  QNH21_RS11500 (QNH21_11500) - 2279048..2279326 (+) 279 WP_171464609.1 DUF3889 domain-containing protein -
  QNH21_RS11505 (QNH21_11505) - 2279361..2279555 (-) 195 WP_024422974.1 YqzE family protein -
  QNH21_RS11510 (QNH21_11510) comGG 2279615..2279998 (-) 384 WP_234107215.1 competence type IV pilus minor pilin ComGG -
  QNH21_RS11515 (QNH21_11515) comGF 2279995..2280522 (-) 528 WP_267955778.1 competence type IV pilus minor pilin ComGF -
  QNH21_RS11520 (QNH21_11520) comGE 2280434..2280748 (-) 315 WP_283859498.1 competence type IV pilus minor pilin ComGE -
  QNH21_RS11525 (QNH21_11525) comGD 2280732..2281178 (-) 447 WP_024422976.1 competence type IV pilus minor pilin ComGD -
  QNH21_RS11530 (QNH21_11530) comGC 2281171..2281464 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=835299 QNH21_RS11480 WP_024422969.1 2276338..2276673(+) (sinR) [Bacillus safensis strain CEW AP102]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=835299 QNH21_RS11480 WP_024422969.1 2276338..2276673(+) (sinR) [Bacillus safensis strain CEW AP102]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946