Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QNH21_RS10340 Genome accession   NZ_CP126090
Coordinates   2070763..2071398 (+) Length   211 a.a.
NCBI ID   WP_044333249.1    Uniprot ID   -
Organism   Bacillus safensis strain CEW AP102     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2065763..2076398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH21_RS10300 (QNH21_10300) - 2065913..2067031 (+) 1119 WP_241257936.1 NADH-dependent flavin oxidoreductase -
  QNH21_RS10305 (QNH21_10305) - 2067085..2067591 (-) 507 WP_024422767.1 PTS glucose transporter subunit IIA -
  QNH21_RS10310 (QNH21_10310) - 2067762..2068181 (+) 420 WP_024422768.1 Hsp20/alpha crystallin family protein -
  QNH21_RS10315 (QNH21_10315) - 2068201..2068662 (-) 462 WP_241257934.1 YppG family protein -
  QNH21_RS10320 (QNH21_10320) - 2068771..2069151 (-) 381 WP_224426683.1 YppE family protein -
  QNH21_RS10325 (QNH21_10325) - 2069201..2069434 (-) 234 WP_232624203.1 DUF5446 family protein -
  QNH21_RS10330 (QNH21_10330) sspM 2069632..2069736 (+) 105 WP_024422772.1 acid-soluble spore protein SspM -
  QNH21_RS10335 (QNH21_10335) - 2069760..2070716 (-) 957 WP_283859478.1 DUF2515 domain-containing protein -
  QNH21_RS10340 (QNH21_10340) recU 2070763..2071398 (+) 636 WP_044333249.1 Holliday junction resolvase RecU Machinery gene
  QNH21_RS10345 (QNH21_10345) - 2071418..2074132 (+) 2715 WP_073206060.1 PBP1A family penicillin-binding protein -
  QNH21_RS10350 (QNH21_10350) - 2074168..2074677 (-) 510 WP_024428110.1 YpoC family protein -
  QNH21_RS10355 (QNH21_10355) nth 2074674..2075336 (-) 663 WP_122631032.1 endonuclease III -
  QNH21_RS10360 (QNH21_10360) - 2075354..2076058 (-) 705 WP_024422777.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24301.64 Da        Isoelectric Point: 9.7504

>NTDB_id=835296 QNH21_RS10340 WP_044333249.1 2070763..2071398(+) (recU) [Bacillus safensis strain CEW AP102]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
KNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESNQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=835296 QNH21_RS10340 WP_044333249.1 2070763..2071398(+) (recU) [Bacillus safensis strain CEW AP102]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACGAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAACGGGGTGTACAAAGGCCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGCATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCGGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGAAG
AAAAACGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAAGCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAATCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.267

95.735

0.701