Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   U4X11_RS20775 Genome accession   NZ_CP140515
Coordinates   4443712..4444308 (-) Length   198 a.a.
NCBI ID   WP_003111077.1    Uniprot ID   Q02K17
Organism   Pseudomonas aeruginosa strain 2023CK-01480     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4438712..4449308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4X11_RS20750 (U4X11_20730) - 4439106..4439255 (-) 150 Protein_4111 hypothetical protein -
  U4X11_RS20755 (U4X11_20735) - 4439348..4440931 (+) 1584 WP_003121915.1 NAD(P)/FAD-dependent oxidoreductase -
  U4X11_RS20760 (U4X11_20740) - 4440928..4441815 (+) 888 WP_003087246.1 SDR family oxidoreductase -
  U4X11_RS20765 (U4X11_20745) - 4441889..4442428 (+) 540 WP_023095858.1 CbrC family protein -
  U4X11_RS20770 (U4X11_20750) - 4442441..4443589 (-) 1149 WP_003111078.1 acyl-CoA dehydrogenase family protein -
  U4X11_RS20775 (U4X11_20755) recR 4443712..4444308 (-) 597 WP_003111077.1 recombination mediator RecR Machinery gene
  U4X11_RS20780 (U4X11_20760) - 4444387..4444713 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  U4X11_RS20785 (U4X11_20765) dnaX 4444759..4446834 (-) 2076 WP_031640402.1 DNA polymerase III subunit gamma/tau -
  U4X11_RS20790 (U4X11_20770) - 4446871..4447737 (+) 867 WP_023657576.1 ABC transporter substrate-binding protein -
  U4X11_RS20800 (U4X11_20780) - 4447991..4448368 (-) 378 WP_003083354.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21201.48 Da        Isoelectric Point: 6.3332

>NTDB_id=835295 U4X11_RS20775 WP_003111077.1 4443712..4444308(-) (recR) [Pseudomonas aeruginosa strain 2023CK-01480]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRRCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=835295 U4X11_RS20775 WP_003111077.1 4443712..4444308(-) (recR) [Pseudomonas aeruginosa strain 2023CK-01480]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCGGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTGGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGTGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02K17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48