Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QNH26_RS16720 Genome accession   NZ_CP126089
Coordinates   3463393..3465108 (-) Length   571 a.a.
NCBI ID   WP_048681817.1    Uniprot ID   A0AAW9N8U9
Organism   Peribacillus frigoritolerans strain CF29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3458393..3470108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH26_RS16700 (QNH26_16700) - 3458479..3459422 (-) 944 Protein_3244 IS1182 family transposase -
  QNH26_RS16705 (QNH26_16705) - 3459673..3460407 (-) 735 WP_283928860.1 glycerophosphodiester phosphodiesterase -
  QNH26_RS16710 (QNH26_16710) spo0A 3460818..3461609 (-) 792 WP_034308269.1 sporulation transcription factor Spo0A -
  QNH26_RS16715 (QNH26_16715) spoIVB 3461939..3463231 (-) 1293 WP_063575695.1 SpoIVB peptidase -
  QNH26_RS16720 (QNH26_16720) recN 3463393..3465108 (-) 1716 WP_048681817.1 DNA repair protein RecN Machinery gene
  QNH26_RS16725 (QNH26_16725) argR 3465131..3465580 (-) 450 WP_034308279.1 transcriptional regulator ArgR -
  QNH26_RS16730 (QNH26_16730) - 3465824..3466651 (-) 828 WP_057278791.1 TlyA family RNA methyltransferase -
  QNH26_RS16735 (QNH26_16735) dxs 3466656..3468548 (-) 1893 WP_063577672.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QNH26_RS16740 (QNH26_16740) - 3468798..3469691 (-) 894 WP_057278792.1 polyprenyl synthetase family protein -
  QNH26_RS16745 (QNH26_16745) - 3469693..3469926 (-) 234 WP_034308286.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 64511.41 Da        Isoelectric Point: 5.2858

>NTDB_id=835233 QNH26_RS16720 WP_048681817.1 3463393..3465108(-) (recN) [Peribacillus frigoritolerans strain CF29]
MLTELSIRNFAIIDSLSVSFEKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFIRHGESKAEIEGLFQIEDEKHPVFAK
AEEFGLDMNDGMAILRRDISQSGKSVCRVNGKLVTISTLREIGRTLIDIHGQHEHQELMDERLHLPLLDQFGGEKIASAL
TEYQKLYKRYETASKQLNGLSQNEQQMVHRLDLIQFQFDEIQKADLKLREDEELMEERKKINNFEKIHEALQTSYNALNG
EQHAIDWLSVAMNNLEEAAGLDEGLKHSSETVSNSYFLLEEAVSNIRDQLDSLDYDTERVEFIESRLNEINQLKRKYGRT
IEEILEYGAAIEEEVEKLQNRETHIAKLEKEMKSIKADLIVEAKNLSELRQKFAQQLTKKIHQELKDLYMEKTIFEPHFL
QTAYTFDELSDRGINQSGLDSMEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVA
QSIAEKIYKVATGSQVLCISHLPQVAAMADTHLFIAKNVRAGRTNTSVKPLIETEKIKEIGRMISGVEITDLTKQHANEL
IQLAKRLKITS

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=835233 QNH26_RS16720 WP_048681817.1 3463393..3465108(-) (recN) [Peribacillus frigoritolerans strain CF29]
TTGTTAACAGAACTATCAATTAGGAATTTTGCGATCATAGACAGCCTGTCCGTTTCATTTGAGAAAGGCTTGACGGTCTT
GACAGGAGAAACAGGGGCAGGGAAGTCAATCATAATAGATGCCGTTCATCTCTTGGTTGGGGGACGTGGTTCTGCAGAGT
TCATTCGGCATGGTGAGTCGAAGGCTGAAATAGAAGGATTATTCCAAATTGAAGATGAAAAACACCCGGTCTTTGCCAAA
GCGGAAGAGTTTGGCCTGGATATGAATGATGGGATGGCGATACTTCGAAGGGATATCTCACAAAGCGGTAAAAGCGTTTG
CAGGGTAAATGGGAAGCTGGTGACGATTTCCACTTTACGTGAGATAGGGCGAACATTGATAGACATCCATGGTCAGCATG
AACATCAGGAATTAATGGATGAACGACTCCATCTTCCGCTGCTCGATCAATTCGGCGGTGAAAAAATCGCATCTGCACTC
ACTGAATACCAAAAGCTATATAAACGATATGAAACCGCTTCTAAACAATTGAATGGTTTGAGCCAAAATGAACAGCAAAT
GGTCCACCGCCTTGATTTGATCCAGTTTCAATTCGATGAAATCCAAAAAGCTGATTTGAAATTACGCGAAGATGAAGAAT
TGATGGAAGAACGGAAGAAAATTAATAATTTCGAAAAAATCCATGAAGCGCTGCAAACCAGTTATAATGCTTTAAATGGT
GAGCAGCATGCAATTGATTGGCTTTCCGTAGCCATGAATAATTTGGAGGAAGCGGCAGGGCTTGATGAAGGTTTAAAGCA
CAGCTCTGAAACCGTTTCAAATAGCTACTTCCTGCTCGAAGAGGCTGTGTCAAACATACGTGACCAATTGGACTCTTTGG
ATTATGATACAGAACGTGTTGAATTCATTGAAAGTCGACTTAATGAAATAAATCAATTAAAGCGTAAATACGGACGGACC
ATCGAGGAAATCCTGGAATATGGGGCCGCAATTGAAGAAGAAGTCGAAAAGCTGCAAAATAGGGAAACCCATATCGCGAA
GCTTGAAAAGGAAATGAAATCCATCAAGGCAGATCTTATCGTCGAAGCAAAGAATCTGTCTGAACTTCGCCAGAAATTCG
CTCAGCAGCTAACCAAAAAGATTCATCAGGAATTAAAGGATCTATATATGGAAAAAACAATTTTTGAACCTCATTTCCTT
CAGACAGCCTATACTTTCGATGAATTGTCAGATAGGGGCATTAATCAGTCAGGGCTGGATTCAATGGAATTTTATATTTC
CACCAATCCAGGTGAACCGTTAAAACCTCTTTCTAAAATCGCATCTGGTGGAGAACTGTCGAGGATCATGCTGGCTTTGA
AAAGCATTTTCTCCAAGCATCAAGGGATAACGTCGATTATATTTGATGAAGTGGATACAGGTGTGAGCGGACGGGTTGCA
CAATCCATTGCCGAAAAGATTTATAAAGTGGCAACTGGATCACAAGTTTTGTGCATATCCCATTTGCCACAGGTGGCAGC
CATGGCGGATACTCACCTTTTCATAGCGAAAAATGTAAGGGCCGGACGCACGAATACCTCGGTCAAGCCGCTAATTGAAA
CTGAAAAAATAAAAGAAATTGGCAGGATGATTTCGGGAGTAGAGATTACGGACTTGACGAAACAACATGCCAATGAATTA
ATCCAGCTGGCCAAAAGGCTGAAGATTACATCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

60.764

100

0.613