Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QNH26_RS06335 Genome accession   NZ_CP126089
Coordinates   1300355..1302172 (+) Length   605 a.a.
NCBI ID   WP_283930168.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain CF29     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1295355..1307172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH26_RS06315 (QNH26_06315) spxA 1295725..1296120 (+) 396 WP_034314502.1 transcriptional regulator SpxA -
  QNH26_RS06320 (QNH26_06320) mecA 1296615..1297283 (+) 669 WP_034314498.1 adaptor protein MecA -
  QNH26_RS06325 (QNH26_06325) cls 1297373..1298881 (+) 1509 WP_283930166.1 cardiolipin synthase -
  QNH26_RS06330 (QNH26_06330) - 1298979..1300187 (+) 1209 WP_283930167.1 competence protein CoiA family protein -
  QNH26_RS06335 (QNH26_06335) pepF 1300355..1302172 (+) 1818 WP_283930168.1 oligoendopeptidase F Regulator
  QNH26_RS06340 (QNH26_06340) - 1303100..1303966 (-) 867 WP_034315496.1 ClpXP adapter SpxH family protein -
  QNH26_RS06345 (QNH26_06345) - 1303990..1304394 (-) 405 WP_053534150.1 globin -
  QNH26_RS06350 (QNH26_06350) - 1304628..1305284 (-) 657 WP_283930169.1 lytic transglycosylase domain-containing protein -
  QNH26_RS06355 (QNH26_06355) - 1305316..1305894 (-) 579 WP_283930170.1 CYTH domain-containing protein -
  QNH26_RS06360 (QNH26_06360) - 1306214..1306834 (+) 621 WP_034314484.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69807.26 Da        Isoelectric Point: 4.7412

>NTDB_id=835225 QNH26_RS06335 WP_283930168.1 1300355..1302172(+) (pepF) [Peribacillus frigoritolerans strain CF29]
MAQETKTNTLPSRSEIAPEDTWRLEDIFATEEDWEAAFKAVKEDLKKAEAHKGTLGESAEKLFAALQLQDEVFEKLGKVY
SYSHMRNDQDTTNPFYQGMEDRAKALYAQAAAAFSYMVPELLSIDESKVEGFLEEKEELKLYKHSLEEINLQRPHILSAE
QEELLAQASEVLDASGNTFGMLNNADLKFPTIKDEEGNEVEITHGRYIRFLESEDRRVREEAFKGVYSKYGEFRNTFAST
LSGEVKNHNFNATVRKYDSARQAALSNNNIPEIVYDNLVKTVNDNLPLLHRYLDLRKKVLELDELHMYDLFTPLVKEVKM
EVTYDEAKDYVLKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTCNENLLNDYLLNSIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHTIHLKAQ
NGEALTADMLTKEYYGLNKKYFGENVTIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVKRYLEFL
KSGSSDYPIEVLKKAGVDMTKAEPVQEAMNVFEEKLNELEELLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=835225 QNH26_RS06335 WP_283930168.1 1300355..1302172(+) (pepF) [Peribacillus frigoritolerans strain CF29]
ATGGCACAGGAAACAAAAACGAATACATTACCTTCAAGAAGTGAAATAGCTCCTGAAGATACATGGAGACTGGAAGATAT
CTTCGCAACCGAGGAAGATTGGGAAGCTGCCTTCAAAGCGGTAAAGGAAGACCTCAAGAAAGCGGAGGCGCATAAAGGGA
CGTTGGGAGAAAGCGCAGAAAAGCTATTTGCGGCCCTCCAACTTCAAGATGAGGTTTTCGAGAAGCTAGGGAAAGTTTAT
TCTTATTCACATATGCGCAATGATCAAGATACAACCAATCCATTTTATCAAGGGATGGAGGATCGGGCAAAAGCTTTATA
CGCACAGGCAGCGGCTGCGTTTTCATATATGGTTCCTGAACTATTGAGTATTGACGAAAGTAAAGTGGAAGGGTTTTTGG
AAGAAAAAGAAGAATTGAAATTATATAAACATTCTTTAGAGGAAATTAATCTTCAGAGACCCCATATCCTATCAGCAGAG
CAGGAAGAACTATTGGCACAGGCATCAGAAGTACTCGATGCATCGGGTAATACTTTCGGTATGCTTAACAATGCCGATCT
GAAATTCCCGACCATCAAGGATGAAGAGGGAAATGAAGTGGAAATTACTCACGGAAGGTATATCAGATTTCTTGAGAGTG
AAGATCGCCGTGTACGTGAGGAGGCATTTAAAGGGGTATACAGCAAGTACGGGGAGTTCCGTAATACATTTGCTTCAACA
CTGTCAGGTGAGGTGAAAAACCACAACTTCAATGCCACGGTTCGAAAATATGATTCAGCACGCCAAGCAGCGTTAAGTAA
TAATAACATTCCGGAGATCGTATACGATAATCTCGTTAAAACGGTCAACGACAACTTGCCATTACTGCACCGTTATCTTG
ATTTACGTAAAAAGGTACTGGAATTAGATGAACTTCATATGTATGATTTATTCACTCCTCTTGTTAAAGAAGTGAAGATG
GAAGTGACATATGACGAGGCCAAAGATTATGTCCTTAAAGGTCTTGCTCCGCTAGGGGAGGACTATTTGAACGTTTTGAA
AGAGGGATTTGAAAACCGTTGGGTCGATGTGCATGAGAACAAAGGGAAACGAAGCGGTGCCTATTCTTCGGGGACATACG
GGACGAACCCTTATATTCTAATGAACTGGCAAAATAACGTCAATAACTTATTCACGCTCGTTCATGAGTTTGGGCATTCG
GTCCATAGCTACTATACACGTAAACATCAGCCATATCCATACGGGAATTATTCAATTTTTGTAGCGGAAGTTGCATCCAC
TTGTAATGAAAACCTGTTGAATGATTATTTACTGAATTCGATCGAAGATGAAAAGAAACGCATCTATTTACTGAACCATT
ACCTGGAAGGCTTCCGTGGCACATTGTTCCGACAAACGATGTTTGCTGAGTTTGAACATACCATTCATTTAAAAGCTCAA
AATGGAGAAGCGTTGACGGCGGATATGCTTACTAAGGAATATTATGGGCTGAACAAGAAATACTTTGGCGAGAACGTGAC
CATTGATGAAGAAATCGGTTTGGAATGGGCTCGTATTCCACACTTCTACTATAATTACTATGTTTATCAATATGCAACTG
GAATCAGTGCAGCAACAGCATTGAGCAAGCAAATCCTTGAAGAAGGAGAGCCTGCTGTCAAAAGGTATCTGGAGTTCCTG
AAATCAGGAAGTTCCGATTATCCGATTGAAGTACTCAAAAAGGCCGGCGTCGATATGACAAAAGCCGAGCCTGTACAAGA
AGCCATGAATGTATTCGAAGAAAAATTAAATGAGTTGGAAGAACTTTTGAATAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.673

98.182

0.498