Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QNH32_RS15720 Genome accession   NZ_CP126088
Coordinates   2999993..3001711 (-) Length   572 a.a.
NCBI ID   WP_025911489.1    Uniprot ID   A0A1N6N653
Organism   Priestia flexa strain CCW CN82     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2994993..3006711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH32_RS15700 (QNH32_15700) - 2995262..2996833 (+) 1572 WP_061784661.1 L-lactate permease -
  QNH32_RS15705 (QNH32_15705) - 2996867..2997115 (-) 249 WP_235859188.1 DUF2798 domain-containing protein -
  QNH32_RS15710 (QNH32_15710) spo0A 2997512..2998303 (-) 792 WP_025911485.1 sporulation transcription factor Spo0A -
  QNH32_RS15715 (QNH32_15715) spoIVB 2998529..2999806 (-) 1278 WP_061784663.1 SpoIVB peptidase -
  QNH32_RS15720 (QNH32_15720) recN 2999993..3001711 (-) 1719 WP_025911489.1 DNA repair protein RecN Machinery gene
  QNH32_RS15725 (QNH32_15725) argR 3001728..3002177 (-) 450 WP_025911491.1 transcriptional regulator ArgR -
  QNH32_RS15730 (QNH32_15730) - 3002364..3003194 (-) 831 WP_062686627.1 TlyA family RNA methyltransferase -
  QNH32_RS15735 (QNH32_15735) dxs 3003191..3005089 (-) 1899 WP_025911495.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QNH32_RS15740 (QNH32_15740) - 3005406..3006299 (-) 894 WP_061784665.1 polyprenyl synthetase family protein -
  QNH32_RS15745 (QNH32_15745) - 3006302..3006535 (-) 234 WP_025911499.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 64299.83 Da        Isoelectric Point: 4.6409

>NTDB_id=835190 QNH32_RS15720 WP_025911489.1 2999993..3001711(-) (recN) [Priestia flexa strain CCW CN82]
MLAELSIKNFAIIDELSVSFEKGLTVLTGETGAGKSIIIDAIHLLVGGRGSSEFVRHGTNRAEIEGLFLIEDEHPCYEKA
KQVGVEVEDGMVVLRRDITMNGKSICRINGKLVTLGILREVGQTLMDIHGQHEHQDLMNQDRHLILLDQYGGQKVEEALS
EYREVFATYTTLKKQLEQLTENEQQMAHRLDLIQFQLDEIKAADLQPNEDEQLMDERLKISNFEKIYTSLTDAYNALHGE
QRGLDWLGVAMNHAEEISNLEDTYGEISEVISSSFYQIEDVSYRIRQQLDLLEYDPKRLNFIESRLNEISHLKRKYGQSV
DEILEYAAQIEDEIDRIENRDTHVEKIKQKLSSVAEDLLVEAKNVSEVRKQLAAELTDSIHQELQELYMAKTIFNIVFEK
LPPNQADSELSGGSVKFTKDGIDSVEFYISTNPGEPLKPLAKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSG
RVAQSIGEKIHAISVDSQVLCISHLPQVAAMADTHLFISKQIKDDRTTTSVLPLNEEEKTKEIARMIAGAEITDLTQQHA
QELLGLAAKIKQ

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=835190 QNH32_RS15720 WP_025911489.1 2999993..3001711(-) (recN) [Priestia flexa strain CCW CN82]
TTGTTAGCAGAACTATCAATCAAAAACTTTGCCATCATTGATGAGCTTTCAGTATCGTTTGAAAAAGGCTTAACAGTTTT
AACAGGTGAAACAGGAGCTGGTAAGTCAATTATTATTGATGCCATTCATCTGCTTGTTGGTGGACGCGGTTCATCCGAGT
TTGTAAGGCATGGAACAAATCGAGCGGAAATCGAAGGGTTATTTCTAATTGAAGACGAGCACCCTTGCTATGAAAAAGCG
AAGCAGGTGGGAGTTGAAGTTGAAGATGGCATGGTGGTACTCAGACGAGATATTACCATGAATGGTAAGAGCATTTGTCG
TATTAATGGAAAGCTAGTCACGCTTGGCATTTTACGTGAAGTGGGTCAAACACTGATGGATATTCATGGTCAGCATGAGC
ATCAGGACTTAATGAACCAAGATCGACATCTAATTCTTCTTGACCAGTATGGAGGTCAGAAGGTTGAAGAAGCACTATCA
GAATATCGAGAAGTGTTTGCTACATATACAACGTTAAAGAAACAATTAGAACAATTAACAGAAAACGAACAGCAAATGGC
CCACCGCTTAGATTTAATTCAATTTCAGCTTGATGAAATAAAAGCAGCCGACCTTCAACCAAATGAAGATGAGCAACTGA
TGGATGAGCGCCTTAAAATTTCTAACTTTGAAAAGATTTATACGTCCTTAACGGATGCATATAACGCTCTTCATGGTGAG
CAAAGAGGACTAGATTGGCTAGGTGTAGCTATGAACCATGCAGAAGAAATTTCGAATTTAGAAGACACCTATGGCGAAAT
TTCAGAAGTCATATCATCAAGCTTTTATCAAATTGAAGATGTGTCTTATCGTATTCGCCAGCAGCTCGATTTATTAGAGT
ATGATCCAAAGCGTCTCAATTTTATTGAATCACGGCTAAATGAAATTAGTCATTTAAAGCGTAAATATGGTCAAAGCGTT
GATGAAATTCTAGAGTATGCAGCTCAAATTGAAGATGAAATTGATCGAATTGAGAACCGGGATACTCATGTTGAAAAAAT
TAAACAAAAACTGTCGAGCGTAGCAGAGGACTTGCTTGTTGAAGCGAAAAATGTTTCTGAGGTTAGAAAGCAGTTAGCTG
CGGAATTAACAGATAGTATTCATCAAGAGCTACAGGAGCTTTATATGGCTAAAACTATCTTTAATATCGTATTTGAAAAG
CTACCGCCAAACCAAGCTGATAGCGAACTGAGCGGTGGTTCTGTTAAGTTTACTAAGGATGGTATTGATTCAGTGGAGTT
TTATATTTCGACAAACCCAGGAGAGCCGCTAAAGCCACTTGCTAAAGTAGCTTCTGGTGGAGAGTTATCTCGTATTATGC
TTGCACTAAAAAGTATTTTCTCTAAGCATCAAGGTGTTACGTCCATTATTTTTGATGAAGTAGATACAGGAGTGAGCGGT
CGTGTCGCACAATCCATTGGTGAAAAAATTCACGCCATCTCTGTAGATTCCCAGGTGCTTTGTATTTCGCATCTTCCACA
GGTCGCTGCTATGGCGGATACACATTTGTTTATTTCAAAGCAAATCAAAGATGATCGCACTACAACATCTGTTTTACCGT
TAAACGAAGAAGAGAAAACAAAAGAAATTGCTCGCATGATTGCAGGAGCCGAAATAACCGATTTAACGCAGCAGCATGCC
CAAGAACTGTTAGGTCTAGCAGCAAAAATTAAACAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N6N653

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.955

100

0.621