Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   QNH32_RS06990 Genome accession   NZ_CP126088
Coordinates   1345205..1346155 (+) Length   316 a.a.
NCBI ID   WP_251385295.1    Uniprot ID   -
Organism   Priestia flexa strain CCW CN82     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1340205..1351155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH32_RS06950 (QNH32_06950) - 1340453..1340623 (+) 171 WP_167556154.1 hypothetical protein -
  QNH32_RS06955 (QNH32_06955) - 1340962..1341165 (+) 204 WP_025907130.1 cold-shock protein -
  QNH32_RS06960 (QNH32_06960) - 1341284..1341898 (+) 615 WP_283880745.1 acetate uptake transporter -
  QNH32_RS06965 (QNH32_06965) - 1342229..1343131 (-) 903 WP_076513268.1 AEC family transporter -
  QNH32_RS06970 (QNH32_06970) - 1343282..1343461 (+) 180 WP_025907136.1 hypothetical protein -
  QNH32_RS06975 (QNH32_06975) - 1343648..1343950 (-) 303 WP_100347473.1 DUF6509 family protein -
  QNH32_RS06980 (QNH32_06980) - 1344076..1344369 (-) 294 WP_225001673.1 putative quinol monooxygenase -
  QNH32_RS06985 (QNH32_06985) - 1344505..1344945 (+) 441 WP_138117178.1 MarR family transcriptional regulator -
  QNH32_RS06990 (QNH32_06990) ceuB 1345205..1346155 (+) 951 WP_251385295.1 ABC transporter permease Machinery gene
  QNH32_RS06995 (QNH32_06995) - 1346148..1347098 (+) 951 WP_076513263.1 iron chelate uptake ABC transporter family permease subunit -
  QNH32_RS07000 (QNH32_07000) - 1347095..1347856 (+) 762 WP_061785364.1 ATP-binding cassette domain-containing protein -
  QNH32_RS07005 (QNH32_07005) - 1347991..1348944 (+) 954 WP_283880747.1 siderophore ABC transporter substrate-binding protein -
  QNH32_RS07010 (QNH32_07010) - 1348981..1349256 (-) 276 WP_025907150.1 DUF4282 domain-containing protein -
  QNH32_RS07015 (QNH32_07015) - 1349417..1349887 (+) 471 WP_078989961.1 GNAT family N-acetyltransferase -

Sequence


Protein


Download         Length: 316 a.a.        Molecular weight: 34688.99 Da        Isoelectric Point: 9.5404

>NTDB_id=835176 QNH32_RS06990 WP_251385295.1 1345205..1346155(+) (ceuB) [Priestia flexa strain CCW CN82]
MKIRYLIILLFLLSLISLFIGVSPVNIYGVLSFDQEQIQVLLISRFPRLITIIIAGVSLSICGLIMQQLTRNKFVSPTTA
GTMDSARLGVLVALMLFTSASPIQKMLVAFVFALIGTFIFMKILDSIKVKDRIFIPLVGLMFGNVIGSITTFFAYKNDLI
QSIGSWLQGDFSTIISGQYELIYLSVPLMIIAYLYANKFTIAGMGEDFATNLGLPFKQVVNIGLVIVALVSSIVLLTVGM
IPFLGLIIPNIVSIYAGDHLKNSLPQTALLGAVFVLTCDILGRVIIYPYEISIGMMVGVIGSGIFLYMLIRRKAYE

Nucleotide


Download         Length: 951 bp        

>NTDB_id=835176 QNH32_RS06990 WP_251385295.1 1345205..1346155(+) (ceuB) [Priestia flexa strain CCW CN82]
GTGAAAATTAGGTATCTTATTATTTTACTATTTTTATTATCGCTTATTTCGTTATTTATCGGCGTATCACCAGTAAATAT
TTATGGGGTCTTATCCTTTGATCAAGAGCAAATTCAAGTGCTACTAATTAGTCGTTTTCCACGATTGATTACCATCATTA
TTGCTGGAGTAAGCTTAAGTATATGTGGATTGATTATGCAGCAGCTGACGAGAAATAAATTTGTTTCTCCGACGACCGCT
GGAACCATGGATTCTGCACGCTTAGGTGTTTTGGTAGCATTGATGTTATTCACATCAGCTAGTCCAATTCAAAAAATGTT
GGTTGCATTTGTTTTCGCTTTAATTGGAACCTTCATTTTTATGAAGATTTTAGATTCTATCAAAGTAAAAGATCGAATTT
TTATTCCTCTTGTTGGTTTGATGTTTGGTAATGTCATTGGTTCCATAACGACATTTTTTGCTTATAAAAATGATTTGATT
CAAAGCATTGGCTCTTGGTTGCAAGGTGATTTCTCTACCATTATTTCAGGACAATATGAGTTAATCTATTTAAGTGTTCC
ACTGATGATTATTGCCTACTTGTATGCTAATAAATTTACGATTGCAGGAATGGGAGAGGACTTTGCTACCAATCTAGGGT
TACCATTTAAGCAGGTTGTGAACATTGGGTTAGTCATCGTAGCACTTGTGTCATCTATCGTACTATTAACGGTTGGAATG
ATTCCTTTTTTAGGATTAATCATTCCGAATATTGTGTCAATATATGCTGGAGATCATTTGAAAAACAGTCTTCCGCAAAC
AGCTTTGCTTGGAGCGGTTTTTGTACTGACTTGTGATATTTTAGGACGAGTTATCATTTATCCATACGAGATTTCCATTG
GTATGATGGTTGGCGTCATTGGTAGTGGGATATTCTTGTACATGTTGATTAGGAGAAAGGCTTATGAGTAA

Domains


Predicted by InterproScan.

(9-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.215

100

0.522