Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QNH32_RS03815 Genome accession   NZ_CP126088
Coordinates   729299..731119 (+) Length   606 a.a.
NCBI ID   WP_076513372.1    Uniprot ID   -
Organism   Priestia flexa strain CCW CN82     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 724299..736119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH32_RS03795 (QNH32_03795) - 724593..725255 (-) 663 WP_025908145.1 TerC family protein -
  QNH32_RS03800 (QNH32_03800) mecA 725577..726260 (+) 684 WP_061785448.1 adaptor protein MecA -
  QNH32_RS03805 (QNH32_03805) cls 726341..727858 (+) 1518 WP_025908143.1 cardiolipin synthase -
  QNH32_RS03810 (QNH32_03810) - 727961..729148 (+) 1188 WP_163071181.1 competence protein CoiA family protein -
  QNH32_RS03815 (QNH32_03815) pepF 729299..731119 (+) 1821 WP_076513372.1 oligoendopeptidase F Regulator
  QNH32_RS03820 (QNH32_03820) - 731160..731336 (-) 177 WP_090752849.1 hypothetical protein -
  QNH32_RS03825 (QNH32_03825) - 731593..732477 (-) 885 WP_061785626.1 ClpXP adapter SpxH family protein -
  QNH32_RS03830 (QNH32_03830) - 732474..732884 (-) 411 WP_061785625.1 globin -
  QNH32_RS03835 (QNH32_03835) - 733105..733749 (-) 645 WP_076513369.1 lytic transglycosylase domain-containing protein -
  QNH32_RS03840 (QNH32_03840) - 733754..734344 (-) 591 WP_076513368.1 CYTH domain-containing protein -
  QNH32_RS03845 (QNH32_03845) - 734652..735038 (+) 387 WP_025908134.1 hypothetical protein -
  QNH32_RS03850 (QNH32_03850) - 735058..735699 (+) 642 WP_025908133.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 70083.68 Da        Isoelectric Point: 4.6532

>NTDB_id=835171 QNH32_RS03815 WP_076513372.1 729299..731119(+) (pepF) [Priestia flexa strain CCW CN82]
MSEQSTVKKLPNRSEIKVEDTWRLEDIFETDEAWEKEFQAVKALVPEMEQYRGKLGESADTLFKALQQQDELTMRVSKLY
TYAHMRYDQDTTNSFYQGLNDRIKMLYTEIASALSYVTPELLAVDEETLKQYLKDSKDLQLYAHALDEVNRERPHILSES
EEAILAQASEALGASSNTFGMLNNADLEFPSIKDENGEEVEITHGRYIRFLESSDRRVREEAFKAVYDTYGKFKNTFAST
LSGTVKKDNFSAKVRNYESARHAALSANNIPEEVYDNLVATVNEYLPLLQRYIDLRKKVLGVDELHMYDLYTPLVQDVKM
EIPYSEAKDYLLKGLAPLGEEYISILKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKEQPYPYGDYSIFVAEVASTCNEALLNDYLLKTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHEIHVRAQ
NGEPLTPELLTKLYYDLNKKYFGDNLVIDEEIGLEWARIPHFYYNYYVYQYATGFSAAAALSKQILEEGDAAVERYLGFL
KAGSSDYPIEVLKRAGVDMTTAEPIKEALEVFKEKLEEMERLLEKN

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=835171 QNH32_RS03815 WP_076513372.1 729299..731119(+) (pepF) [Priestia flexa strain CCW CN82]
ATGAGTGAACAATCCACGGTGAAAAAGCTGCCAAATCGCAGTGAAATTAAAGTAGAAGATACATGGAGATTAGAAGATAT
TTTTGAAACAGATGAAGCGTGGGAGAAAGAATTTCAAGCTGTTAAAGCGTTAGTTCCGGAAATGGAACAATATCGCGGCA
AGCTTGGAGAATCAGCAGACACGCTTTTTAAAGCACTTCAGCAGCAAGATGAACTAACAATGCGGGTCAGCAAGCTTTAT
ACATATGCACATATGAGGTATGACCAAGATACAACGAACTCATTCTATCAAGGATTAAATGATCGAATTAAAATGTTGTA
TACAGAAATTGCGAGTGCGTTATCTTACGTCACGCCTGAACTATTAGCAGTAGATGAGGAAACGCTAAAACAATATTTAA
AAGATAGCAAGGATTTACAGCTATATGCACATGCGCTGGATGAAGTGAATCGTGAGCGTCCTCATATCCTTTCTGAGAGT
GAAGAAGCTATTCTAGCACAGGCATCTGAAGCGCTAGGAGCATCAAGTAATACGTTCGGTATGCTGAATAATGCTGATTT
AGAGTTTCCATCTATTAAAGATGAAAACGGGGAAGAAGTGGAGATTACCCACGGTCGTTATATTCGGTTTTTAGAAAGCA
GTGATCGACGCGTTAGAGAAGAAGCGTTTAAAGCCGTCTATGATACGTATGGAAAGTTTAAAAATACATTTGCGAGTACT
CTTAGCGGAACGGTTAAAAAAGATAACTTTAGCGCTAAGGTCCGTAACTACGAATCAGCTCGCCATGCAGCTCTAAGCGC
AAACAATATTCCAGAAGAGGTATATGATAATTTAGTTGCAACGGTAAACGAATATCTGCCTCTATTACAGCGCTATATTG
ACCTACGAAAGAAAGTGTTAGGTGTTGATGAGCTTCACATGTATGATCTATATACACCGCTTGTGCAAGACGTCAAAATG
GAAATACCATATAGCGAAGCAAAAGATTATTTATTAAAAGGTTTGGCGCCGCTTGGAGAAGAGTACATTTCCATTTTAAA
AGAAGGATTTGAAAATCGCTGGGTTGATGTGCACGAAAACAAAGGAAAGCGAAGCGGTGCTTATTCTTCTGGAACATATG
GAACAAATCCATATATTTTAATGAACTGGCAGGACAATGTGAACAATCTTTTCACATTAGCTCATGAGTTTGGTCACTCA
GTGCACAGTTACTATACGCGTAAAGAACAGCCTTACCCATACGGTGATTATTCAATCTTTGTCGCTGAAGTCGCATCTAC
GTGTAACGAAGCCCTATTAAATGATTATTTATTGAAAACAATCGACGATGAAAAGAAACGATTATACTTATTAAATCATT
ATTTAGAAGGCTTCCGCGGTACCGTGTTCCGTCAAACGATGTTTGCTGAATTTGAGCATGAAATTCACGTTCGGGCTCAA
AATGGTGAACCGCTAACACCAGAGCTGCTAACAAAGTTATACTATGATTTAAATAAAAAGTACTTTGGTGATAATTTAGT
CATTGATGAAGAGATTGGCTTAGAGTGGGCAAGGATTCCACATTTCTACTATAATTATTATGTGTATCAATACGCAACAG
GCTTCAGCGCAGCTGCAGCGCTAAGTAAGCAAATTCTTGAAGAAGGAGACGCGGCTGTTGAGCGTTACCTTGGCTTCTTA
AAAGCTGGAAGCTCTGATTATCCAATCGAAGTGCTAAAACGCGCAGGAGTGGATATGACAACTGCTGAACCAATCAAAGA
AGCATTAGAAGTGTTTAAAGAAAAGCTTGAAGAGATGGAACGTTTGTTAGAGAAAAACTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.327

98.02

0.484