Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   R8570_RS05560 Genome accession   NZ_AP026932
Coordinates   1117075..1118145 (+) Length   356 a.a.
NCBI ID   WP_000817879.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701549     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1112075..1123145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8570_RS05545 (PC1528_11100) ylqF 1113308..1114159 (+) 852 WP_000201319.1 ribosome biogenesis GTPase YlqF -
  R8570_RS05550 (PC1528_11110) - 1114146..1114925 (+) 780 WP_000201096.1 ribonuclease HII -
  R8570_RS05555 (PC1528_11120) - 1114941..1116491 (+) 1551 WP_000392533.1 ClC family H(+)/Cl(-) exchange transporter -
  R8570_RS05560 (PC1528_11130) xerS 1117075..1118145 (+) 1071 WP_000817879.1 tyrosine recombinase XerS Machinery gene
  R8570_RS05565 (PC1528_11140) - 1118218..1119207 (-) 990 WP_000873987.1 lipoate--protein ligase -
  R8570_RS05570 (PC1528_11150) lpdA 1119271..1120974 (-) 1704 WP_050263893.1 dihydrolipoyl dehydrogenase -
  R8570_RS05575 (PC1528_11160) - 1121020..1122063 (-) 1044 WP_000752725.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41086.15 Da        Isoelectric Point: 9.6949

>NTDB_id=83517 R8570_RS05560 WP_000817879.1 1117075..1118145(+) (xerS) [Streptococcus pneumoniae strain PZ900701549]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETAGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGGKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVSDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=83517 R8570_RS05560 WP_000817879.1 1117075..1118145(+) (xerS) [Streptococcus pneumoniae strain PZ900701549]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCAACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGCAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTGGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCTAGCACACAAGTCACTGACCTCTATACCCATATTGTTAGTGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.438

100

0.994

Multiple sequence alignment