Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QNH25_RS14810 Genome accession   NZ_CP126087
Coordinates   2888882..2889523 (-) Length   213 a.a.
NCBI ID   WP_024423322.1    Uniprot ID   A0AAP7QNQ1
Organism   Bacillus safensis strain CEW-AP100     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2883882..2894523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH25_RS14775 (QNH25_14775) - 2885009..2885440 (+) 432 WP_024423315.1 Na(+)/H(+) antiporter subunit B -
  QNH25_RS14780 (QNH25_14780) - 2885440..2885781 (+) 342 WP_024423316.1 Na(+)/H(+) antiporter subunit C -
  QNH25_RS14785 (QNH25_14785) - 2885774..2887252 (+) 1479 WP_044332445.1 Na+/H+ antiporter subunit D -
  QNH25_RS14790 (QNH25_14790) - 2887259..2887738 (+) 480 WP_024423318.1 Na+/H+ antiporter subunit E -
  QNH25_RS14795 (QNH25_14795) - 2887738..2888019 (+) 282 WP_024423319.1 Na(+)/H(+) antiporter subunit F1 -
  QNH25_RS14800 (QNH25_14800) mnhG 2888003..2888377 (+) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  QNH25_RS14805 (QNH25_14805) - 2888469..2888858 (-) 390 WP_024423321.1 hotdog fold thioesterase -
  QNH25_RS14810 (QNH25_14810) comA 2888882..2889523 (-) 642 WP_024423322.1 response regulator transcription factor Regulator
  QNH25_RS14815 (QNH25_14815) comP 2889604..2891916 (-) 2313 WP_283859580.1 ATP-binding protein Regulator
  QNH25_RS14820 (QNH25_14820) comX 2891970..2892140 (-) 171 WP_073207246.1 competence pheromone ComX -
  QNH25_RS14825 (QNH25_14825) - 2892137..2893051 (-) 915 WP_024423324.1 polyprenyl synthetase family protein -
  QNH25_RS14830 (QNH25_14830) degQ 2893203..2893343 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  QNH25_RS14835 (QNH25_14835) - 2893849..2894205 (+) 357 WP_151039930.1 inner spore coat protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24149.54 Da        Isoelectric Point: 4.6344

>NTDB_id=835142 QNH25_RS14810 WP_024423322.1 2888882..2889523(-) (comA) [Bacillus safensis strain CEW-AP100]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=835142 QNH25_RS14810 WP_024423322.1 2888882..2889523(-) (comA) [Bacillus safensis strain CEW-AP100]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTAA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTTTAGAAACCAACCATCAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGCAAAACAGA
GACGAAAGACAAAATTATTGAATACATACACCGGACATTGCAAGGGGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGATCTCTTAACCGAACGGGAGTGTTTGATC
CTTAGAGAAGTGGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.963

100

0.723