Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QNH25_RS11825 Genome accession   NZ_CP126087
Coordinates   2334740..2335510 (-) Length   256 a.a.
NCBI ID   WP_283859502.1    Uniprot ID   -
Organism   Bacillus safensis strain CEW-AP100     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2329740..2340510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH25_RS11805 (QNH25_11805) - 2329832..2330653 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  QNH25_RS11810 (QNH25_11810) - 2330679..2331317 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  QNH25_RS11815 (QNH25_11815) glyS 2331485..2333530 (-) 2046 WP_213404638.1 glycine--tRNA ligase subunit beta -
  QNH25_RS11820 (QNH25_11820) glyQ 2333523..2334410 (-) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  QNH25_RS11825 (QNH25_11825) recO 2334740..2335510 (-) 771 WP_283859502.1 DNA repair protein RecO Machinery gene
  QNH25_RS11830 (QNH25_11830) - 2335546..2335689 (-) 144 WP_003217288.1 YqzL family protein -
  QNH25_RS11835 (QNH25_11835) era 2335838..2336743 (-) 906 WP_007501305.1 GTPase Era -
  QNH25_RS11840 (QNH25_11840) - 2336736..2337134 (-) 399 WP_008356263.1 cytidine deaminase -
  QNH25_RS11845 (QNH25_11845) - 2337248..2337634 (-) 387 WP_073206342.1 diacylglycerol kinase family protein -
  QNH25_RS11850 (QNH25_11850) ybeY 2337612..2338091 (-) 480 WP_024423021.1 rRNA maturation RNase YbeY -
  QNH25_RS11855 (QNH25_11855) - 2338092..2340179 (-) 2088 WP_172881095.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29319.95 Da        Isoelectric Point: 8.1204

>NTDB_id=835133 QNH25_RS11825 WP_283859502.1 2334740..2335510(-) (recO) [Bacillus safensis strain CEW-AP100]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELMDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVIGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKQQTKQEIRQVLDHYYDEYSGLYLKSKKFM
NQMESMKKLMGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=835133 QNH25_RS11825 WP_283859502.1 2334740..2335510(-) (recO) [Bacillus safensis strain CEW-AP100]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGAAAAATTGGCGTGATGGCCAGAGGCGCTAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGCACCTTTCTCATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGGACC
ATTCGGGAAGACTTATTTCTGACCGCATATGCCGCATATATGACGGAATTAATGGATAAAGGGACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTTCTGCTTCAATCTCTGCGTCATCTCAACGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATCGGGATGAAGCCTGAACTTGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTCCATTTCTCGATAAGAGATAACGGCTTCATTTGCCAAAATTGTTTTTCGAAAGATCCATATAAACTGCCCTTATC
CCCCGCAGCTGCAAGGCTACTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGATGTGAAACAGCAGA
CGAAACAAGAAATTCGTCAAGTGCTTGATCACTACTATGACGAATATTCCGGCCTCTATTTAAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTAATGGGTGACGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75

100

0.75