Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   U4V76_RS03170 Genome accession   NZ_CP140485
Coordinates   600780..601163 (+) Length   127 a.a.
NCBI ID   WP_002856861.1    Uniprot ID   -
Organism   Campylobacter jejuni strain PNUSAC038549     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 595780..606163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4V76_RS03150 (U4V76_03150) - 595859..597793 (-) 1935 WP_002926153.1 ribonuclease R family protein -
  U4V76_RS03155 (U4V76_03155) ilvC 597912..598934 (+) 1023 WP_002857064.1 ketol-acid reductoisomerase -
  U4V76_RS03160 (U4V76_03160) - 598938..600020 (+) 1083 WP_002931136.1 divergent polysaccharide deacetylase family protein -
  U4V76_RS03165 (U4V76_03165) dprA 600010..600783 (+) 774 WP_002926145.1 DNA-processing protein DprA Machinery gene
  U4V76_RS03170 (U4V76_03170) dprB 600780..601163 (+) 384 WP_002856861.1 Holliday junction resolvase RuvX Machinery gene
  U4V76_RS03175 (U4V76_03175) - 601192..602031 (+) 840 WP_079263941.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  U4V76_RS03180 (U4V76_03180) msrA 602207..602704 (-) 498 WP_002855174.1 peptide-methionine (S)-S-oxide reductase MsrA -
  U4V76_RS03185 (U4V76_03185) ppa 602745..603263 (-) 519 WP_002855031.1 inorganic diphosphatase -
  U4V76_RS03190 (U4V76_03190) adk 603273..603851 (-) 579 WP_002855137.1 adenylate kinase -
  U4V76_RS03195 (U4V76_03195) aspS 603848..605599 (-) 1752 WP_002854803.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14074.57 Da        Isoelectric Point: 9.5433

>NTDB_id=835122 U4V76_RS03170 WP_002856861.1 600780..601163(+) (dprB) [Campylobacter jejuni strain PNUSAC038549]
MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=835122 U4V76_RS03170 WP_002856861.1 600780..601163(+) (dprB) [Campylobacter jejuni strain PNUSAC038549]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCGTAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCTGCCAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGCGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTATCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGTGGAACAAGTAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449