Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   SPH25_RS05600 Genome accession   NZ_CP140484
Coordinates   1190055..1191104 (+) Length   349 a.a.
NCBI ID   WP_000115446.1    Uniprot ID   -
Organism   Helicobacter pylori strain 52N     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1185055..1196104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPH25_RS05580 - 1185108..1185851 (+) 744 WP_014533514.1 carbonic anhydrase -
  SPH25_RS05585 - 1186082..1187206 (-) 1125 WP_001144165.1 DUF874 family protein -
  SPH25_RS05590 asd 1187638..1188678 (-) 1041 WP_000860947.1 aspartate-semialdehyde dehydrogenase -
  SPH25_RS05595 hisS 1188665..1189993 (-) 1329 WP_322536462.1 histidine--tRNA ligase -
  SPH25_RS05600 waaF 1190055..1191104 (+) 1050 WP_000115446.1 lipopolysaccharide heptosyltransferase II Regulator
  SPH25_RS05605 - 1191297..1191785 (-) 489 WP_000744157.1 hypothetical protein -
  SPH25_RS05610 fusA 1192315..1194393 (-) 2079 WP_000101827.1 elongation factor G -
  SPH25_RS05615 rpsG 1194405..1194872 (-) 468 WP_001254357.1 30S ribosomal protein S7 -
  SPH25_RS05620 rpsL 1194888..1195295 (-) 408 WP_001142318.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39615.48 Da        Isoelectric Point: 9.5992

>NTDB_id=835102 SPH25_RS05600 WP_000115446.1 1190055..1191104(+) (waaF) [Helicobacter pylori strain 52N]
MSVNAPKRMRILLRLPNWLGDGVMASSLFHTLKHHYPNAHFILVGPQMTCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQFFRSLFLSHAIMAAPKEYHQVEKYCFLFSQFLEKELDRKSVLPL
KLAFNLPIHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDAIVSEEILKLIKGLLKNPLLFN
NAYNLCGKTSIEELIERIAILDLFITNDSGPMHVAASTQTPLIALFGPTDEKETRPYKAQKTIVLNHHLSCSPCKKRVCP
LKNEKNHLCMKSITPLEVLKAAHTLLEKP

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=835102 SPH25_RS05600 WP_000115446.1 1190055..1191104(+) (waaF) [Helicobacter pylori strain 52N]
ATGAGCGTAAATGCGCCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTAATGGCAAGCTC
GCTTTTTCACACCCTTAAACACCACTACCCTAACGCGCATTTTATCTTAGTGGGCCCACAAATGACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGATGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTTTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAATTTTTTCGTTCTTTGTTCCTTAGCCATGCGATAATGGCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAGAAAAAGAATTGGATAGAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAATCTCCCCATTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGCGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGACGCTATCGTTTCTGAAGAAATTTTAAAACTCATTAAAGGCTTATTAAAAAACCCTTTATTATTCAAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATAGAGCGCATCGCTATTTTGGATTTATTCATCACTAA
CGATAGCGGTCCTATGCATGTGGCTGCTAGCACACAAACCCCCTTAATCGCTCTTTTTGGCCCCACCGATGAAAAAGAAA
CTCGCCCCTATAAAGCTCAAAAAACGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAATGAAAAAAACCATTTGTGCATGAAATCTATCACGCCCCTTGAAGTCTTAAAAGCCGCTCACACTCTTTTAGA
AAAGCCTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.059

97.421

0.361