Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QNH25_RS01925 Genome accession   NZ_CP126087
Coordinates   357820..358248 (-) Length   142 a.a.
NCBI ID   WP_024424305.1    Uniprot ID   A0A5C0WGQ8
Organism   Bacillus safensis strain CEW-AP100     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 352820..363248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH25_RS01895 (QNH25_01895) - 352981..353310 (+) 330 WP_024424311.1 YckD family protein -
  QNH25_RS01900 (QNH25_01900) - 353356..354120 (-) 765 WP_034624002.1 MBL fold metallo-hydrolase -
  QNH25_RS01905 (QNH25_01905) - 354236..354652 (+) 417 WP_025092811.1 Lrp/AsnC family transcriptional regulator -
  QNH25_RS01910 (QNH25_01910) - 354681..355487 (+) 807 WP_073203727.1 AAC(3) family N-acetyltransferase -
  QNH25_RS01915 (QNH25_01915) - 355489..355875 (-) 387 WP_073203730.1 competence protein ComJ -
  QNH25_RS01920 (QNH25_01920) - 355995..357692 (-) 1698 WP_073203732.1 methyl-accepting chemotaxis protein -
  QNH25_RS01925 (QNH25_01925) nucA/comI 357820..358248 (-) 429 WP_024424305.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QNH25_RS01930 (QNH25_01930) - 358616..360685 (+) 2070 WP_073203734.1 hydantoinase/oxoprolinase family protein -
  QNH25_RS01935 (QNH25_01935) - 360675..362663 (+) 1989 WP_025092816.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15971.96 Da        Isoelectric Point: 6.2215

>NTDB_id=835101 QNH25_RS01925 WP_024424305.1 357820..358248(-) (nucA/comI) [Bacillus safensis strain CEW-AP100]
MKLLKMILLLLLIVIGVATGYIQLEQGKQETANSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKHSDEQRDRS
LHGVPTKRGYDRDEWPMAMCKEGGTGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=835101 QNH25_RS01925 WP_024424305.1 357820..358248(-) (nucA/comI) [Bacillus safensis strain CEW-AP100]
ATGAAACTTCTTAAAATGATTCTCTTGCTTTTATTGATTGTTATTGGTGTAGCAACAGGCTATATCCAGCTGGAGCAAGG
GAAACAAGAGACAGCGAATTCATCTTATGACAAAACGATTCATTTTCCATCAGACCGCTACCCCGAAACAGCCAAGCACA
TAGAAGAAGCCATTGATGAAGGTCATTCATCCATTTGTACAATTGACCGTAAACATAGTGATGAGCAGAGGGATCGATCA
TTACATGGCGTTCCAACAAAGCGCGGGTATGATCGTGACGAATGGCCAATGGCAATGTGCAAAGAAGGAGGCACAGGAGC
TTCTGTCAAATATGTACGCCCTTCTGATAATAGAGGCGCAGGCTCGTGGGTAAGTCATCAATTATCGGATGATCCTGACG
GCACAAGAATTCAATTTATCATCGATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C0WGQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.667

80.282

0.535