Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QNH40_RS07170 Genome accession   NZ_CP126086
Coordinates   1409772..1410050 (+) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus altitudinis strain CES-OCA-19     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1404772..1415050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH40_RS07150 (QNH40_07150) - 1405378..1406373 (-) 996 WP_098680858.1 hypothetical protein -
  QNH40_RS07155 (QNH40_07155) - 1406944..1408176 (-) 1233 WP_008345134.1 aminopeptidase -
  QNH40_RS07160 (QNH40_07160) - 1408282..1408413 (-) 132 WP_003210922.1 protein YkpC -
  QNH40_RS07165 (QNH40_07165) mreBH 1408488..1409495 (-) 1008 WP_283931316.1 rod-share determining protein MreBH -
  QNH40_RS07170 (QNH40_07170) abrB 1409772..1410050 (+) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QNH40_RS07175 (QNH40_07175) - 1410195..1411484 (+) 1290 WP_007498613.1 ATP-binding protein -
  QNH40_RS07180 (QNH40_07180) - 1411512..1412354 (+) 843 WP_046343442.1 gamma-glutamylcyclotransferase family protein -
  QNH40_RS07185 (QNH40_07185) - 1412392..1413060 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=835060 QNH40_RS07170 WP_017359400.1 1409772..1410050(+) (abrB) [Bacillus altitudinis strain CES-OCA-19]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=835060 QNH40_RS07170 WP_017359400.1 1409772..1410050(+) (abrB) [Bacillus altitudinis strain CES-OCA-19]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTCT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGCTAAAAGAGCTTCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543