Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   QNH40_RS05290 Genome accession   NZ_CP126086
Coordinates   1055901..1056479 (+) Length   192 a.a.
NCBI ID   WP_017366958.1    Uniprot ID   A0A5D4P9G2
Organism   Bacillus altitudinis strain CES-OCA-19     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1050901..1061479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH40_RS05270 (QNH40_05270) - 1051394..1052689 (-) 1296 WP_035700157.1 globin-coupled sensor protein -
  QNH40_RS05275 (QNH40_05275) - 1052781..1054313 (-) 1533 WP_283931282.1 FAD-dependent oxidoreductase -
  QNH40_RS05280 (QNH40_05280) - 1054456..1055316 (+) 861 WP_017366957.1 SDR family oxidoreductase -
  QNH40_RS05285 (QNH40_05285) - 1055375..1055611 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  QNH40_RS05290 (QNH40_05290) comK 1055901..1056479 (+) 579 WP_017366958.1 competence protein ComK Regulator
  QNH40_RS05295 (QNH40_05295) - 1056623..1057729 (+) 1107 WP_268388677.1 D-TA family PLP-dependent enzyme -
  QNH40_RS05300 (QNH40_05300) - 1058116..1058598 (+) 483 WP_135226753.1 hypothetical protein -
  QNH40_RS05305 (QNH40_05305) - 1058629..1060068 (-) 1440 WP_254001144.1 PLP-dependent aminotransferase family protein -
  QNH40_RS05310 (QNH40_05310) - 1060212..1061381 (+) 1170 WP_135226755.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22348.40 Da        Isoelectric Point: 8.7996

>NTDB_id=835046 QNH40_RS05290 WP_017366958.1 1055901..1056479(+) (comK) [Bacillus altitudinis strain CES-OCA-19]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHIFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=835046 QNH40_RS05290 WP_017366958.1 1055901..1056479(+) (comK) [Bacillus altitudinis strain CES-OCA-19]
GTGTCAGGAATTAGTGAAACACCATTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGAGTATATTCAAAAGTGATCGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCGCTGCAAATTATAGAACGCA
GTTGCAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGTATTTCCCACAAGCCTCCC
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGCCCTCAATGCGGATGGATCTCCCA
CAAATACATTCATATCTTTCAGGAATCATCCCTCGGAGACACGGTTGTTACTTTTACAAATGAGCAATCGGTCAAATTAG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTACACCGAACAGCGTATCTCCGAACGAAATTTCAAGATCGACTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAACCTTGTGTATGATTTTATCTTAAGAGA
ACTTCGTAATCGTTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4P9G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615