Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   U3886_RS14545 Genome accession   NZ_CP140466
Coordinates   2996437..2997066 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain GZ04-0083     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2991437..3002066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U3886_RS14530 (U3886_14545) helD 2991679..2993733 (-) 2055 WP_001295354.1 DNA helicase IV -
  U3886_RS14535 (U3886_14550) yccF 2993856..2994302 (+) 447 WP_001261235.1 YccF domain-containing protein -
  U3886_RS14540 (U3886_14555) yccS 2994312..2996474 (+) 2163 WP_000875058.1 YccS family putative transporter -
  U3886_RS14545 (U3886_14560) sxy/tfoX 2996437..2997066 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  U3886_RS14550 (U3886_14565) sulA 2997285..2997794 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  U3886_RS14555 (U3886_14570) ompA 2998151..2999191 (+) 1041 WP_000750416.1 porin OmpA -
  U3886_RS14560 (U3886_14575) matP 2999267..2999719 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  U3886_RS14565 (U3886_14580) ycbZ 2999905..3001665 (+) 1761 WP_000152888.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=835000 U3886_RS14545 WP_000839153.1 2996437..2997066(-) (sxy/tfoX) [Escherichia coli strain GZ04-0083]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=835000 U3886_RS14545 WP_000839153.1 2996437..2997066(-) (sxy/tfoX) [Escherichia coli strain GZ04-0083]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1