Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QNH33_RS06445 Genome accession   NZ_CP126085
Coordinates   1351968..1353785 (+) Length   605 a.a.
NCBI ID   WP_264896639.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain CF20     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1346968..1358785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH33_RS06425 (QNH33_06425) spxA 1347337..1347732 (+) 396 WP_034314502.1 transcriptional regulator SpxA -
  QNH33_RS06430 (QNH33_06430) mecA 1348227..1348895 (+) 669 WP_034314498.1 adaptor protein MecA -
  QNH33_RS06435 (QNH33_06435) cls 1348986..1350494 (+) 1509 WP_264896637.1 cardiolipin synthase -
  QNH33_RS06440 (QNH33_06440) - 1350592..1351800 (+) 1209 WP_264896638.1 competence protein CoiA family protein -
  QNH33_RS06445 (QNH33_06445) pepF 1351968..1353785 (+) 1818 WP_264896639.1 oligoendopeptidase F Regulator
  QNH33_RS06450 (QNH33_06450) - 1354708..1355574 (-) 867 WP_231688558.1 ClpXP adapter SpxH family protein -
  QNH33_RS06455 (QNH33_06455) - 1355598..1356002 (-) 405 WP_283906771.1 globin -
  QNH33_RS06460 (QNH33_06460) - 1356236..1356610 (-) 375 Protein_1201 lytic transglycosylase domain-containing protein -
  QNH33_RS06465 (QNH33_06465) - 1356673..1356894 (-) 222 WP_283906772.1 hypothetical protein -
  QNH33_RS06470 (QNH33_06470) - 1356926..1357504 (-) 579 WP_053534152.1 CYTH domain-containing protein -
  QNH33_RS06475 (QNH33_06475) - 1357824..1358444 (+) 621 WP_034314484.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69897.34 Da        Isoelectric Point: 4.7467

>NTDB_id=834993 QNH33_RS06445 WP_264896639.1 1351968..1353785(+) (pepF) [Peribacillus frigoritolerans strain CF20]
MAQETKTNTLPSRSEIAPEDTWRLEDIFATEEDWEAAFKAVKEDLKKAEAHKGTLGESAEKLFAALQLQDEVFEKLGKVY
SYSHMRNDQDTTNPFYQGMEDRAKALYAQAAAAFSYMVPELLSIDESKVEGFLEEKEELKLYKHSLEEINLQRPHILSAE
QEELLAQASEVLDASGNTFGMLNNADLKFPTIKDEEGNEVEITHGRYIRFLESEDRRVREEAFKGVYSKYGEFRNTFAST
LSGEVKNHNFNATVRKYDSARQAALSNNNIPETVYDNLVKTVNDNLPLLHRYLDLRKKVLELDELHMYDLFTPLVKEVKM
EVTYDEAKDYVLKGLAPLGEDYLNVLKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTCNENLLNDYLLKSIEDEKKRIYLLNHYLEGFRGTLFRQTMFAEFEHTIHLKSQ
NGEALTADMLTKEYYELNKKYFGENVTIDEEIGLEWARIPHFYYNYYVYQYATGISAATALSKQILEEGEPAVKRYLEFL
KSGSSDYPIEVLKKAGVDMTKAEPVQEAMNVFEEKLNELEELLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=834993 QNH33_RS06445 WP_264896639.1 1351968..1353785(+) (pepF) [Peribacillus frigoritolerans strain CF20]
ATGGCACAGGAAACAAAAACGAATACATTACCTTCAAGAAGTGAAATAGCTCCTGAAGATACGTGGAGACTGGAAGATAT
CTTCGCAACCGAGGAAGATTGGGAAGCTGCCTTCAAAGCGGTCAAGGAAGACCTCAAGAAAGCGGAGGCGCATAAAGGGA
CGTTGGGAGAAAGCGCAGAAAAGTTATTTGCGGCCCTCCAACTTCAAGATGAGGTTTTCGAGAAGCTAGGGAAAGTTTAT
TCTTATTCACATATGCGCAATGATCAAGATACTACTAATCCATTTTATCAAGGGATGGAGGATCGGGCAAAAGCTTTATA
CGCACAGGCAGCGGCTGCGTTTTCATATATGGTTCCTGAACTATTGAGTATTGACGAAAGTAAAGTGGAAGGGTTTTTGG
AAGAAAAAGAAGAATTGAAATTATATAAACATTCTTTAGAGGAAATTAATCTTCAGAGACCCCATATCCTATCAGCAGAG
CAGGAAGAACTATTGGCGCAGGCATCAGAAGTACTTGATGCATCGGGCAATACTTTCGGTATGCTTAACAATGCCGATCT
GAAATTCCCGACCATCAAGGATGAAGAGGGAAATGAAGTGGAAATTACTCACGGAAGGTATATCAGATTTCTTGAGAGTG
AAGATCGCCGTGTACGTGAGGAGGCATTTAAAGGGGTATACAGCAAGTACGGGGAGTTCCGTAATACATTTGCTTCAACC
CTGTCAGGTGAGGTGAAAAACCACAACTTCAATGCCACGGTTCGAAAATATGATTCAGCACGCCAAGCGGCGTTAAGTAA
TAATAACATTCCGGAGACCGTATACGATAATCTCGTTAAAACGGTCAACGACAACTTGCCATTACTGCACCGTTATCTTG
ATTTACGTAAAAAGGTGCTGGAATTAGATGAACTTCATATGTATGATCTATTCACTCCTCTTGTTAAAGAAGTGAAGATG
GAAGTGACATATGACGAGGCCAAAGATTATGTCCTTAAAGGTCTTGCTCCGCTAGGGGAGGACTATTTGAACGTTTTGAA
AGAGGGATTTGAAAACCGTTGGGTCGATGTGCATGAGAACAAAGGGAAACGAAGCGGTGCCTATTCTTCGGGTACATACG
GGACGAACCCTTATATTCTAATGAACTGGCAAAATAACGTCAATAACTTATTCACGCTCGTTCATGAGTTTGGGCATTCG
GTCCATAGCTACTATACACGTAAACATCAGCCATATCCATACGGGAATTATTCGATATTTGTAGCGGAAGTTGCATCGAC
TTGTAATGAAAACCTGTTGAATGATTATTTACTGAAATCAATCGAAGATGAAAAGAAACGCATCTATTTACTGAACCATT
ACCTGGAAGGTTTCCGTGGCACATTGTTCCGACAAACGATGTTTGCAGAGTTTGAACATACCATTCATTTAAAGTCTCAA
AATGGGGAAGCATTGACGGCGGATATGCTTACTAAGGAATATTATGAGCTGAACAAGAAATACTTTGGCGAGAACGTGAC
CATTGATGAAGAAATCGGTTTGGAATGGGCTCGTATTCCACACTTCTACTATAATTACTATGTTTATCAATATGCAACTG
GAATCAGTGCAGCAACTGCATTGAGCAAGCAAATCCTTGAAGAAGGAGAGCCTGCTGTCAAAAGGTATCTGGAGTTCTTG
AAATCAGGAAGTTCCGATTATCCGATTGAAGTACTCAAAAAGGCCGGCGTAGATATGACAAAAGCCGAGCCTGTACAAGA
AGCCATGAATGTATTCGAAGAGAAATTAAATGAGTTGGAAGAACTTTTGAATAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.842

98.182

0.499