Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QNH33_RS00565 Genome accession   NZ_CP126085
Coordinates   106174..107562 (+) Length   462 a.a.
NCBI ID   WP_053537036.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain CF20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 101174..112562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH33_RS00545 (QNH33_00545) - 101297..101758 (+) 462 WP_034305095.1 CtsR family transcriptional regulator -
  QNH33_RS00550 (QNH33_00550) - 101780..102331 (+) 552 WP_034305093.1 UvrB/UvrC motif-containing protein -
  QNH33_RS00555 (QNH33_00555) - 102328..103404 (+) 1077 WP_053537034.1 protein arginine kinase -
  QNH33_RS00560 (QNH33_00560) clpC 103534..105975 (+) 2442 WP_053537035.1 ATP-dependent protease ATP-binding subunit ClpC -
  QNH33_RS00565 (QNH33_00565) radA 106174..107562 (+) 1389 WP_053537036.1 DNA repair protein RadA Machinery gene
  QNH33_RS00570 (QNH33_00570) disA 107565..108638 (+) 1074 WP_034305085.1 DNA integrity scanning diadenylate cyclase DisA -
  QNH33_RS00575 (QNH33_00575) - 108865..109962 (+) 1098 WP_063595516.1 PIN/TRAM domain-containing protein -
  QNH33_RS00580 (QNH33_00580) ispD 109983..110675 (+) 693 WP_127777539.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  QNH33_RS00585 (QNH33_00585) ispF 110690..111169 (+) 480 WP_034305078.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50244.91 Da        Isoelectric Point: 8.2388

>NTDB_id=834983 QNH33_RS00565 WP_053537036.1 106174..107562(+) (radA) [Peribacillus frigoritolerans strain CF20]
MAVKKKTKFMCQSCGYESAKWMGKCPGCGEWNKMVEETEIVKPARKGAFTHSEVRVSGEREKAAPITTIQSEKEPRIKTD
LMELNRALGGGIVQGSLVLIGGDPGIGKSTLLLQVSSQLAHKQKKVLYISGEESVKQTKLRADRLGTMSENLFVYSETDM
DYIQQAITDVKPDLVIIDSIQTVYHSEVTSAPGSVSQVRECTASLMRIAKTNGIAIFIVGHVTKEGAIAGPRLLEHMVDT
VLYFEGERHHTYRIIRAVKNRFGSTNEMGIFEMKEHGLEEVANPSEIFLEERSQGASGSTVVASMEGTRPVLVEIQALIS
PTSFGNPRRMATGIDHNRVSLLMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAISIASSFRDKPTNPADCIIGE
VGLTGEVRRVSRIEQRVQEAAKLGFERVIIPANNIGGWTAPKGIKIIGVSSVSEALKQSLGG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=834983 QNH33_RS00565 WP_053537036.1 106174..107562(+) (radA) [Peribacillus frigoritolerans strain CF20]
ATGGCTGTAAAAAAGAAAACAAAATTTATGTGTCAGTCTTGTGGGTATGAGTCCGCGAAATGGATGGGGAAATGCCCAGG
CTGCGGTGAATGGAACAAAATGGTCGAGGAAACCGAAATCGTTAAACCTGCAAGAAAAGGCGCTTTTACCCATTCAGAGG
TTAGAGTTTCCGGGGAACGGGAGAAGGCAGCACCCATAACGACTATTCAATCAGAAAAAGAACCACGCATTAAGACGGAT
CTAATGGAATTGAACCGTGCTCTTGGGGGCGGGATTGTGCAGGGATCACTTGTATTGATCGGAGGGGACCCGGGTATCGG
TAAGTCCACCCTGCTTCTACAGGTATCATCCCAATTGGCGCATAAACAGAAAAAAGTGCTTTATATATCAGGTGAAGAAT
CAGTCAAGCAGACCAAATTGAGAGCGGACCGGCTTGGGACCATGTCGGAAAATCTATTCGTTTATTCTGAAACCGATATG
GACTATATCCAACAGGCAATTACAGACGTTAAACCGGATTTGGTCATTATTGACTCGATTCAAACGGTTTACCATTCAGA
GGTTACATCTGCCCCGGGAAGCGTTTCACAAGTGAGGGAATGCACAGCCTCACTCATGCGCATTGCTAAAACGAACGGGA
TCGCGATTTTTATCGTCGGTCACGTTACAAAAGAAGGGGCCATTGCGGGACCACGGCTGCTTGAGCACATGGTTGACACC
GTATTATATTTTGAAGGGGAAAGACACCATACATATCGAATTATACGTGCGGTTAAAAATCGCTTTGGTTCGACGAATGA
GATGGGTATTTTTGAAATGAAAGAACATGGATTGGAAGAGGTGGCGAATCCATCGGAAATTTTCCTTGAAGAACGGTCGC
AAGGAGCTTCGGGGTCCACAGTCGTCGCATCCATGGAGGGCACAAGGCCGGTGCTTGTTGAAATTCAAGCATTGATTTCT
CCTACGAGTTTTGGCAATCCGAGGCGGATGGCCACGGGAATTGACCACAATCGAGTTTCGCTTTTAATGGCTGTCCTGGA
AAAGAGAGTGGGCTTGCTGCTCCAAAACCAAGATGCGTATTTAAAGGTTGCTGGCGGTGTCAAGCTGGATGAACCGGCAA
TTGACCTCGCTGTCGCAATAAGCATTGCATCAAGCTTCCGTGATAAACCAACAAACCCTGCCGATTGCATCATTGGTGAA
GTAGGGCTGACTGGTGAAGTGAGAAGGGTGTCACGAATTGAACAAAGGGTGCAGGAAGCAGCGAAATTAGGGTTTGAGCG
GGTTATCATACCGGCTAATAATATAGGAGGGTGGACCGCGCCGAAAGGTATTAAGATCATTGGTGTTTCATCGGTTTCGG
AGGCTCTTAAACAATCGTTAGGGGGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-226)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(369-434)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

77.826

99.567

0.775
  radA Streptococcus mitis NCTC 12261

61.978

98.485

0.61
  radA Streptococcus mitis SK321

61.758

98.485

0.608
  radA Streptococcus pneumoniae TIGR4

61.538

98.485

0.606
  radA Streptococcus pneumoniae R6

61.538

98.485

0.606
  radA Streptococcus pneumoniae Rx1

61.538

98.485

0.606
  radA Streptococcus pneumoniae D39

61.538

98.485

0.606