Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QNH46_RS22955 Genome accession   NZ_CP126084
Coordinates   4991836..4992789 (-) Length   317 a.a.
NCBI ID   WP_283926174.1    Uniprot ID   -
Organism   Paenibacillus woosongensis strain B2_4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4986836..4997789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNH46_RS22935 (QNH46_22930) - 4987363..4988649 (+) 1287 WP_283926170.1 Gfo/Idh/MocA family oxidoreductase -
  QNH46_RS22940 (QNH46_22935) - 4989105..4990100 (-) 996 WP_283926171.1 siderophore ABC transporter substrate-binding protein -
  QNH46_RS22945 (QNH46_22940) - 4990144..4990902 (-) 759 WP_283926172.1 ABC transporter ATP-binding protein -
  QNH46_RS22950 (QNH46_22945) - 4990896..4991846 (-) 951 WP_283926173.1 iron chelate uptake ABC transporter family permease subunit -
  QNH46_RS22955 (QNH46_22950) ceuB 4991836..4992789 (-) 954 WP_283926174.1 ABC transporter permease Machinery gene
  QNH46_RS22960 (QNH46_22955) - 4993185..4993547 (-) 363 WP_283926175.1 Gfo/Idh/MocA family oxidoreductase -
  QNH46_RS22965 (QNH46_22960) - 4993884..4994015 (+) 132 WP_283926176.1 DUF4023 domain-containing protein -
  QNH46_RS22970 (QNH46_22965) - 4994106..4994285 (-) 180 WP_155612251.1 hypothetical protein -
  QNH46_RS22975 (QNH46_22970) - 4994404..4995132 (-) 729 WP_283926177.1 DUF6081 family protein -
  QNH46_RS22980 (QNH46_22975) - 4995163..4996083 (-) 921 WP_283926178.1 prenyltransferase -
  QNH46_RS22985 (QNH46_22980) - 4996260..4996766 (+) 507 WP_213591257.1 hypothetical protein -
  QNH46_RS22990 (QNH46_22985) - 4996868..4997410 (+) 543 WP_283926179.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34648.66 Da        Isoelectric Point: 9.8337

>NTDB_id=834976 QNH46_RS22955 WP_283926174.1 4991836..4992789(-) (ceuB) [Paenibacillus woosongensis strain B2_4]
MKKTYLITALIVLSVVSLLIGAKTTSLMDLLRLDPEQWEIMRISRFPRLISIIIAGVSMSIVGLIMQQLTRNKFVSPTTA
GTMDSAGFGIMVSMLLFSSAGPLGKIAVAFVFAMLGTLIFMKILDKVKYKDSIFIPLVGLMFGGIVSSATTFFAYKYDLI
QSMNAWLFGDFSMVMQGRYELLYISVPLVAAAYFYANKFTVAGMGEEFSVNLGLNYKQVVNIGLFIVALVTSVVVLTVGS
IPFIGLIVPNLVTIFQGDNLKKNLSGTALLGAVFVLACDILGRVIIYPYEVPIGLTVGVIGSGVFLYLLMRRKTYEH

Nucleotide


Download         Length: 954 bp        

>NTDB_id=834976 QNH46_RS22955 WP_283926174.1 4991836..4992789(-) (ceuB) [Paenibacillus woosongensis strain B2_4]
ATGAAGAAGACATATCTGATAACAGCGCTAATCGTATTATCCGTCGTTTCGCTCTTGATCGGAGCCAAGACGACTTCATT
GATGGACTTGCTTCGCCTAGATCCGGAACAGTGGGAAATCATGCGAATTAGCCGGTTTCCTAGACTGATCAGCATTATTA
TCGCCGGGGTAAGCATGAGCATCGTCGGTTTAATTATGCAGCAGCTGACGCGCAACAAGTTCGTCTCGCCTACGACGGCG
GGAACAATGGATTCCGCAGGGTTCGGCATCATGGTATCGATGCTTCTGTTCTCTTCTGCGGGACCGCTTGGCAAAATCGC
TGTTGCCTTCGTGTTTGCGATGCTTGGTACCCTCATTTTCATGAAAATACTCGACAAAGTGAAATACAAGGATTCGATCT
TCATTCCGCTGGTCGGGTTGATGTTCGGCGGAATTGTCAGCTCGGCGACGACATTTTTCGCATACAAGTATGATCTGATT
CAGAGCATGAATGCATGGCTGTTTGGTGATTTCTCCATGGTCATGCAGGGACGGTACGAGCTTCTTTACATAAGCGTCCC
TCTTGTAGCCGCGGCTTATTTTTATGCGAATAAATTTACGGTTGCGGGCATGGGCGAAGAGTTCTCCGTCAATCTTGGCC
TGAATTATAAGCAGGTCGTCAATATAGGGCTCTTTATCGTGGCGCTGGTCACCTCGGTTGTTGTGCTGACGGTAGGTTCG
ATTCCTTTCATCGGCCTCATCGTGCCGAATCTGGTGACGATCTTCCAAGGGGACAACCTGAAGAAGAACCTGTCGGGTAC
GGCGCTGCTAGGAGCTGTATTCGTTCTGGCGTGCGACATTCTGGGAAGGGTCATCATTTACCCGTATGAGGTGCCCATCG
GCCTGACCGTGGGTGTTATCGGCAGCGGCGTTTTCCTGTACTTGCTAATGAGGAGAAAGACATATGAGCATTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.376

98.107

0.524