Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   QNK02_RS11005 Genome accession   NZ_CP126083
Coordinates   2175977..2176597 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain C1_9     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2170977..2181597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK02_RS10965 (QNK02_10965) ypqE 2172108..2172614 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  QNK02_RS10970 (QNK02_10970) ypqA 2172752..2173171 (+) 420 WP_041849958.1 Hsp20/alpha crystallin family protein -
  QNK02_RS10975 (QNK02_10975) yppG 2173192..2173569 (-) 378 WP_004398696.1 YppG family protein -
  QNK02_RS10980 (QNK02_10980) yppF 2173757..2173945 (+) 189 WP_003230690.1 YppF family protein -
  QNK02_RS10985 (QNK02_10985) yppE 2173984..2174355 (-) 372 WP_021481525.1 YppE family protein -
  QNK02_RS10990 (QNK02_10990) yppD 2174401..2174646 (-) 246 WP_041849959.1 DUF5446 family protein -
  QNK02_RS10995 (QNK02_10995) sspM 2174845..2174949 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  QNK02_RS11000 (QNK02_11000) yppC 2174974..2175936 (-) 963 WP_041849960.1 DUF2515 domain-containing protein -
  QNK02_RS11005 (QNK02_11005) recU 2175977..2176597 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  QNK02_RS11010 (QNK02_11010) ponA 2176619..2179369 (+) 2751 WP_041849961.1 PBP1A family penicillin-binding protein -
  QNK02_RS11015 (QNK02_11015) ypoC 2179444..2179938 (-) 495 WP_041849962.1 YpoC family protein -
  QNK02_RS11020 (QNK02_11020) nth 2179935..2180594 (-) 660 WP_009967580.1 endonuclease III -
  QNK02_RS11025 (QNK02_11025) dnaD 2180613..2181311 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=834908 QNK02_RS11005 WP_004399067.1 2175977..2176597(+) (recU) [Bacillus subtilis strain C1_9]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=834908 QNK02_RS11005 WP_004399067.1 2175977..2176597(+) (recU) [Bacillus subtilis strain C1_9]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1