Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   QNK02_RS10200 Genome accession   NZ_CP126083
Coordinates   2044688..2045818 (+) Length   376 a.a.
NCBI ID   WP_021481447.1    Uniprot ID   -
Organism   Bacillus subtilis strain C1_9     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2043323..2060760 2044688..2045818 within 0


Gene organization within MGE regions


Location: 2043323..2060760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK02_RS10190 (QNK02_10190) - 2043323..2043697 (+) 375 WP_021481445.1 YoqO family protein -
  QNK02_RS21075 - 2044409..2044555 (+) 147 Protein_1953 phage holin -
  QNK02_RS10200 (QNK02_10200) rapC 2044688..2045818 (+) 1131 WP_021481447.1 tetratricopeptide repeat protein Regulator
  QNK02_RS10205 (QNK02_10205) - 2045808..2045951 (+) 144 WP_153801665.1 hypothetical protein -
  QNK02_RS10210 (QNK02_10210) - 2046105..2046305 (-) 201 WP_021481449.1 hypothetical protein -
  QNK02_RS10215 (QNK02_10215) - 2046527..2046901 (-) 375 Protein_1957 UV damage repair protein UvrX -
  QNK02_RS10220 (QNK02_10220) - 2046899..2047054 (-) 156 Protein_1958 T7SS effector LXG polymorphic toxin -
  QNK02_RS10225 (QNK02_10225) yobM 2047155..2047712 (-) 558 WP_038829958.1 SMI1/KNR4 family protein -
  QNK02_RS10230 (QNK02_10230) yobN 2047840..2049276 (+) 1437 WP_120363441.1 flavin monoamine oxidase family protein -
  QNK02_RS10235 (QNK02_10235) csaA 2049526..2049858 (-) 333 WP_032725963.1 chaperone CsaA -
  QNK02_RS10240 (QNK02_10240) yobQ 2049923..2050648 (-) 726 WP_072175277.1 helix-turn-helix domain-containing protein -
  QNK02_RS10245 (QNK02_10245) yobR 2050663..2051403 (-) 741 WP_041849922.1 GNAT family N-acetyltransferase -
  QNK02_RS10250 (QNK02_10250) yobS 2051481..2052056 (-) 576 WP_015714086.1 TetR/AcrR family transcriptional regulator -
  QNK02_RS10255 (QNK02_10255) yobT 2052062..2052763 (-) 702 WP_153940054.1 MBL fold metallo-hydrolase -
  QNK02_RS10260 (QNK02_10260) yobU 2052839..2053321 (-) 483 WP_014480008.1 GyrI-like domain-containing protein -
  QNK02_RS10265 (QNK02_10265) yobV 2053375..2054313 (-) 939 WP_015714088.1 YafY family protein -
  QNK02_RS10270 (QNK02_10270) csk22 2054518..2055063 (+) 546 WP_015714089.1 mother cell-specific sporulation protein Csk22 -
  QNK02_RS10275 (QNK02_10275) czrA 2055090..2055413 (-) 324 WP_003231284.1 Zn(II)-responsive metalloregulatory transcriptional repressor CzrA -
  QNK02_RS10280 (QNK02_10280) yocA 2055608..2056285 (+) 678 WP_153940055.1 lysozyme family protein -
  QNK02_RS10285 (QNK02_10285) yozB 2056375..2056911 (-) 537 WP_003231280.1 DUF420 domain-containing protein -
  QNK02_RS10290 (QNK02_10290) yocB 2057048..2057830 (-) 783 WP_015251912.1 VLRF1 family aeRF1-type release factor -
  QNK02_RS10295 (QNK02_10295) yocC 2058001..2058498 (+) 498 WP_015714090.1 GNAT family N-acetyltransferase -
  QNK02_RS10300 (QNK02_10300) yocD 2058562..2059539 (+) 978 WP_015714091.1 LD-carboxypeptidase -
  QNK02_RS10305 (QNK02_10305) desE 2059702..2060760 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44393.16 Da        Isoelectric Point: 5.8915

>NTDB_id=834907 QNK02_RS10200 WP_021481447.1 2044688..2045818(+) (rapC) [Bacillus subtilis strain C1_9]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=834907 QNK02_RS10200 WP_021481447.1 2044688..2045818(+) (rapC) [Bacillus subtilis strain C1_9]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTGACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAGAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455