Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   QNK02_RS02145 Genome accession   NZ_CP126083
Coordinates   422926..424074 (+) Length   382 a.a.
NCBI ID   WP_014475800.1    Uniprot ID   A0A0D1KXJ1
Organism   Bacillus subtilis strain C1_9     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 417926..429074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK02_RS02125 (QNK02_02125) yclH 418302..418982 (-) 681 WP_041850693.1 ABC transporter ATP-binding protein -
  QNK02_RS02130 (QNK02_02130) yclI 418998..420458 (-) 1461 WP_041850694.1 ABC transporter permease -
  QNK02_RS02135 (QNK02_02135) yclJ 420671..421354 (+) 684 WP_003246532.1 two-component system response regulator YclJ -
  QNK02_RS02140 (QNK02_02140) yclK 421341..422762 (+) 1422 WP_072173981.1 two-component system sensor histidine kinase YclK -
  QNK02_RS02145 (QNK02_02145) rapC 422926..424074 (+) 1149 WP_014475800.1 response regulator aspartate phosphatase RapC Regulator
  QNK02_RS02150 (QNK02_02150) phrC 424058..424180 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  QNK02_RS02155 (QNK02_02155) yczM 424280..424369 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  QNK02_RS02160 (QNK02_02160) yczN 424451..424564 (-) 114 WP_014478831.1 YjcZ family sporulation protein -
  QNK02_RS02165 (QNK02_02165) thrD 424717..426081 (-) 1365 WP_041850695.1 aspartate kinase -
  QNK02_RS02170 (QNK02_02170) ceuB 426466..427416 (+) 951 WP_014475804.1 petrobactin ABC transporter permease YclN Machinery gene
  QNK02_RS02175 (QNK02_02175) yclO 427409..428356 (+) 948 WP_003246705.1 petrobactin ABC transporter permease YclO -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45649.65 Da        Isoelectric Point: 4.9618

>NTDB_id=834879 QNK02_RS02145 WP_014475800.1 422926..424074(+) (rapC) [Bacillus subtilis strain C1_9]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=834879 QNK02_RS02145 WP_014475800.1 422926..424074(+) (rapC) [Bacillus subtilis strain C1_9]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAATTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTTTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCCTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAATGCCATTT
CGTCTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAATATGGCCC
AAGCGGAACAAAAAGCCCAGCTGGTCGGAAGAGCATACTACAATCTCGGATTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACATTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAGTACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
TTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTACTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KXJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

99.738

100

0.997
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568