Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QNK02_RS01960 Genome accession   NZ_CP126083
Coordinates   366250..366699 (-) Length   149 a.a.
NCBI ID   WP_014475770.1    Uniprot ID   A0A0D1KPR3
Organism   Bacillus subtilis strain C1_9     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 361250..371699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QNK02_RS01925 (QNK02_01925) yckA 361401..362081 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  QNK02_RS01930 (QNK02_01930) yckB 362091..362954 (-) 864 WP_080121173.1 transporter substrate-binding domain-containing protein -
  QNK02_RS01935 (QNK02_01935) - 363115..363312 (+) 198 WP_120363256.1 hypothetical protein -
  QNK02_RS01940 (QNK02_01940) yckC 363332..363787 (+) 456 WP_024572178.1 RDD family protein -
  QNK02_RS01945 (QNK02_01945) yckD 363869..364201 (+) 333 WP_003246247.1 YckD family protein -
  QNK02_RS01950 (QNK02_01950) bglC 364355..365788 (+) 1434 WP_038828490.1 6-phospho-beta-glucosidase -
  QNK02_RS01955 (QNK02_01955) nin/comJ 365825..366223 (-) 399 WP_021481824.1 DNA-entry nuclease inhibitor Regulator
  QNK02_RS01960 (QNK02_01960) nucA/comI 366250..366699 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  QNK02_RS01965 (QNK02_01965) tlpC 366867..368588 (-) 1722 WP_021481821.1 methyl-accepting chemotaxis protein TlpC -
  QNK02_RS01970 (QNK02_01970) hxlB 368698..369255 (-) 558 WP_041850679.1 6-phospho-3-hexuloisomerase -
  QNK02_RS01975 (QNK02_01975) hxlA 369261..369893 (-) 633 WP_041850680.1 3-hexulose-6-phosphate synthase -
  QNK02_RS01980 (QNK02_01980) hxlR 370125..370487 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16440.39 Da        Isoelectric Point: 4.5282

>NTDB_id=834877 QNK02_RS01960 WP_014475770.1 366250..366699(-) (nucA/comI) [Bacillus subtilis strain C1_9]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=834877 QNK02_RS01960 WP_014475770.1 366250..366699(-) (nucA/comI) [Bacillus subtilis strain C1_9]
GTGAACATCACGACGGACATCATAAAAACAATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KPR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

98.658

100

0.987